Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQH39_RS08220 Genome accession   NZ_CP035241
Coordinates   1638556..1639266 (+) Length   236 a.a.
NCBI ID   WP_000760672.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633556..1644266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS08205 (EQH39_08640) - 1634097..1634345 (-) 249 WP_000364990.1 YneF family protein -
  EQH39_RS08210 (EQH39_08645) treC 1634601..1636226 (-) 1626 WP_000171223.1 alpha,alpha-phosphotrehalase -
  EQH39_RS08215 (EQH39_08655) treP 1636404..1638371 (-) 1968 WP_000514358.1 PTS system trehalose-specific EIIBC component -
  EQH39_RS08220 (EQH39_08660) treR 1638556..1639266 (+) 711 WP_000760672.1 trehalose operon repressor Regulator
  EQH39_RS08225 (EQH39_08665) - 1639299..1640102 (-) 804 WP_000157674.1 ABC transporter ATP-binding protein -
  EQH39_RS08230 (EQH39_08670) - 1640115..1640992 (-) 878 Protein_1645 ABC transporter permease -
  EQH39_RS08235 (EQH39_08675) - 1641004..1641813 (-) 810 Protein_1646 ABC transporter substrate-binding protein -
  EQH39_RS08240 (EQH39_08680) amiF 1642432..1643358 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=337063 EQH39_RS08220 WP_000760672.1 1638556..1639266(+) (treR) [Streptococcus pneumoniae strain TVO_1901948]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYIVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=337063 EQH39_RS08220 WP_000760672.1 1638556..1639266(+) (treR) [Streptococcus pneumoniae strain TVO_1901948]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATCGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATATCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589

Multiple sequence alignment