Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FZN31_RS23495 Genome accession   NZ_CP043414
Coordinates   5000147..5001976 (-) Length   609 a.a.
NCBI ID   WP_000035580.1    Uniprot ID   B7LU33
Organism   Escherichia coli strain EC42405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4995147..5006976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN31_RS23470 (FZN31_23875) bioP 4995865..4996764 (-) 900 WP_001196238.1 biotin transporter -
  FZN31_RS23475 (FZN31_23880) yigL 4996840..4997640 (-) 801 WP_105288331.1 sugar/pyridoxal phosphate phosphatase YigL -
  FZN31_RS23480 (FZN31_23885) pldB 4997648..4998670 (-) 1023 WP_161399954.1 lysophospholipase L2 -
  FZN31_RS23485 (FZN31_23890) rhtB 4998781..4999401 (+) 621 WP_000171697.1 homoserine/homoserine lactone efflux protein -
  FZN31_RS23490 (FZN31_23895) rhtC 4999463..5000083 (-) 621 WP_000928844.1 threonine export protein RhtC -
  FZN31_RS23495 (FZN31_23900) recQ 5000147..5001976 (-) 1830 WP_000035580.1 ATP-dependent DNA helicase RecQ Machinery gene
  FZN31_RS23500 (FZN31_23905) pldA 5002108..5002977 (-) 870 WP_001259701.1 phospholipase A -
  FZN31_RS23505 (FZN31_23910) yigI 5003142..5003609 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  FZN31_RS23510 (FZN31_23915) rarD 5003661..5004551 (+) 891 WP_000379995.1 EamA family transporter RarD -
  FZN31_RS23515 (FZN31_23920) - 5004855..5005703 (+) 849 WP_032185566.1 YPO3983 family protein -
  FZN31_RS23520 (FZN31_23925) - 5005700..5006197 (+) 498 WP_032185564.1 DUF943 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68364.49 Da        Isoelectric Point: 7.0906

>NTDB_id=337053 FZN31_RS23495 WP_000035580.1 5000147..5001976(-) (recQ) [Escherichia coli strain EC42405]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=337053 FZN31_RS23495 WP_000035580.1 5000147..5001976(-) (recQ) [Escherichia coli strain EC42405]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGGGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACCGTACTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTACTGCTAAACGGTCTTACCGTGGTTGTTTCACCACTGATTTCGTTGATGAAAGAT
CAGGTGGATCAGCTACAGGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAGCTTGAAGT
AATGACAGGCTGCCGCACCGGGCAAATCCGCCTGCTGTATATCGCGCCGGAACGCCTGATGCTGGATAACTTCCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATACGCTGCCCTCGGTCAGCTGCGTCAGCGTTTTCCGACGCTGCCGTTTATGGCGCTGACTGCCACCGCCGACGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAGTTCAAACCTCTCGATCAGCTGATGCGCTACGTGCAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAATAGTCGTGCGAAAGTAGAAGACACCGCCGCGCGTCTGCAAAGCAAGGGTATCAGCGCAGCGGCTTATCA
CGCCGGGCTTGAAAACGATGTCCGTGCGGACGTGCAGGAAAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TAGCGTTCGGCATGGGCATCAACAAGCCTAACGTCCGCTTCGTGGTTCACTTTGATATTCCACGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCCGATATGGCGTG
GCTGCGCCGTTGCCTGGAAGAAAAACCGCAGGGGCAGTTGCAGGATATCGAACGTCATAAACTCAATGCGATGGGCGCGT
TTGCTGAGGCGCAAACCTGTCGTCGTCTGGTGCTGCTGAATTACTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGTCTCGATCCGCCAAAACAGTACGATGGTTCAACCGATGCGCAGATTGCGCTTTCCACCATTGGTCGTGTGAA
TCAGCGTTTTGGTATGGGCTATGTAGTGGAAGTGATTCGCGGTGCGAATAACCAGCGAATCCGCGACTATGGTCATGACA
AACTGAAAGTCTACGGCATGGGCCGCGATAAAAGTCATGAGCACTGGGTGAGCGTAATCCGCCAGTTGATTCATCTCGGT
CTGGTGACGCAAAACATCGCCCAGCATTCGGCATTACAACTGACAGAAGCCGCACGCCCGGTGTTGCGCGGCGAATCCTC
TTTACAACTTGCCGTGCCGCGTATTGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGTGGCAATTACGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCGACCTTGATTGAGATGGCGGAACAGATGCCAATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGCGATGACGAAGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LU33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.372

97.209

0.392