Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EQH39_RS05320 Genome accession   NZ_CP035241
Coordinates   1080600..1081409 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075600..1086409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS05300 (EQH39_05605) - 1077934..1078920 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  EQH39_RS05305 (EQH39_05610) - 1079221..1079964 (-) 744 Protein_1060 potassium channel family protein -
  EQH39_RS05310 (EQH39_05615) - 1080011..1080265 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  EQH39_RS05315 (EQH39_05620) relB 1080267..1080509 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  EQH39_RS05320 (EQH39_05625) vicX 1080600..1081409 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  EQH39_RS05325 (EQH39_05630) micB 1081411..1082760 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EQH39_RS05330 (EQH39_05635) micA 1082753..1083457 (-) 705 WP_000722076.1 response regulator YycF Regulator
  EQH39_RS05335 (EQH39_05640) mutY 1083512..1084687 (-) 1176 WP_000886153.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=337048 EQH39_RS05320 WP_001289493.1 1080600..1081409(-) (vicX) [Streptococcus pneumoniae strain TVO_1901948]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=337048 EQH39_RS05320 WP_001289493.1 1080600..1081409(-) (vicX) [Streptococcus pneumoniae strain TVO_1901948]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCATCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGGCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGACCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment