Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FZN31_RS18135 Genome accession   NZ_CP043414
Coordinates   3798924..3799529 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC42405     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3793924..3804529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN31_RS18115 (FZN31_18465) aes 3794065..3795024 (+) 960 WP_105277208.1 acetyl esterase -
  FZN31_RS18120 (FZN31_18470) hemH 3795021..3795983 (-) 963 WP_160530584.1 ferrochelatase -
  FZN31_RS18125 (FZN31_18475) adk 3796115..3796759 (-) 645 WP_001220233.1 adenylate kinase -
  FZN31_RS18130 (FZN31_18480) htpG 3796940..3798814 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  FZN31_RS18135 (FZN31_18485) recR 3798924..3799529 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FZN31_RS18140 (FZN31_18490) ybaB 3799529..3799858 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FZN31_RS18145 (FZN31_18495) dnaX 3799911..3801842 (-) 1932 WP_032183490.1 DNA polymerase III subunit gamma/tau -
  FZN31_RS18150 (FZN31_18500) apt 3801971..3802522 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FZN31_RS18155 (FZN31_18505) ybaN 3802675..3803052 (-) 378 WP_001188905.1 DUF454 family protein -
  FZN31_RS18160 (FZN31_18510) priC 3803122..3803649 (+) 528 WP_088541926.1 primosomal replication protein N'' -
  FZN31_RS18165 (FZN31_18515) rsmS 3803663..3803824 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=337034 FZN31_RS18135 WP_001195025.1 3798924..3799529(-) (recR) [Escherichia coli strain EC42405]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=337034 FZN31_RS18135 WP_001195025.1 3798924..3799529(-) (recR) [Escherichia coli strain EC42405]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443