Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FZN31_RS00320 Genome accession   NZ_CP043414
Coordinates   71935..72411 (-) Length   158 a.a.
NCBI ID   WP_001186171.1    Uniprot ID   -
Organism   Escherichia coli strain EC42405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66935..77411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN31_RS00280 (FZN31_00285) setC 67412..68596 (-) 1185 WP_088541991.1 sugar efflux transporter -
  FZN31_RS00285 (FZN31_00290) rhuM 68995..69156 (-) 162 Protein_57 RhuM family protein -
  FZN31_RS00290 (FZN31_00295) - 69394..70236 (-) 843 WP_001280503.1 DUF4942 domain-containing protein -
  FZN31_RS00295 (FZN31_00300) - 70321..70518 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  FZN31_RS00300 (FZN31_00305) - 70594..70743 (-) 150 Protein_60 DUF5983 family protein -
  FZN31_RS00305 (FZN31_00310) - 70740..71117 (-) 378 WP_000854681.1 TA system toxin CbtA family protein -
  FZN31_RS00310 (FZN31_00315) - 71207..71572 (-) 366 WP_021562928.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FZN31_RS00315 (FZN31_00320) - 71651..71872 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  FZN31_RS00320 (FZN31_00325) radC 71935..72411 (-) 477 WP_001186171.1 RadC family protein Machinery gene
  FZN31_RS00325 (FZN31_00330) - 72426..72911 (-) 486 WP_000206666.1 antirestriction protein -
  FZN31_RS00330 (FZN31_00335) - 73003..73821 (-) 819 WP_001175163.1 DUF932 domain-containing protein -
  FZN31_RS00335 (FZN31_00340) - 73911..74144 (-) 234 WP_001278287.1 DUF905 family protein -
  FZN31_RS00340 (FZN31_00345) - 74150..74827 (-) 678 WP_001097301.1 hypothetical protein -
  FZN31_RS00345 (FZN31_00350) - 74975..75655 (-) 681 WP_001282919.1 WYL domain-containing protein -
  FZN31_RS00350 (FZN31_00355) - 75858..76742 (-) 885 WP_000010408.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=336981 FZN31_RS00320 WP_001186171.1 71935..72411(-) (radC) [Escherichia coli strain EC42405]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=336981 FZN31_RS00320 WP_001186171.1 71935..72411(-) (radC) [Escherichia coli strain EC42405]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment