Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FZN32_RS21690 Genome accession   NZ_CP043406
Coordinates   4463569..4464084 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NMBU-W13E19     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4458569..4469084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN32_RS21645 (FZN32_22190) csrA 4459022..4459207 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FZN32_RS21675 (FZN32_22220) yqaB 4460799..4461365 (+) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FZN32_RS21680 (FZN32_22225) yqaA 4461362..4461790 (+) 429 WP_001287454.1 YqaA family protein -
  FZN32_RS21685 (FZN32_22230) gshA 4461863..4463419 (+) 1557 WP_000611791.1 glutamate--cysteine ligase -
  FZN32_RS21690 (FZN32_22235) luxS 4463569..4464084 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FZN32_RS21695 (FZN32_22240) emrB 4464148..4465686 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FZN32_RS21700 (FZN32_22245) emrA 4465703..4466875 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FZN32_RS21705 (FZN32_22250) emrR 4467002..4467532 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FZN32_RS21710 (FZN32_22255) ygaH 4467623..4467958 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  FZN32_RS21715 (FZN32_22260) ygaZ 4467948..4468685 (-) 738 WP_000445659.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=336971 FZN32_RS21690 WP_001130211.1 4463569..4464084(+) (luxS) [Escherichia coli strain NMBU-W13E19]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=336971 FZN32_RS21690 WP_001130211.1 4463569..4464084(+) (luxS) [Escherichia coli strain NMBU-W13E19]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment