Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FZN32_RS19910 Genome accession   NZ_CP043406
Coordinates   4100279..4101505 (-) Length   408 a.a.
NCBI ID   WP_001161828.1    Uniprot ID   -
Organism   Escherichia coli strain NMBU-W13E19     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4095279..4106505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN32_RS19895 (FZN32_20385) - 4097584..4098675 (-) 1092 WP_016239079.1 Stealth CR1 domain-containing protein -
  FZN32_RS19900 (FZN32_20390) - 4098679..4099350 (-) 672 WP_000590810.1 ABC transporter ATP-binding protein -
  FZN32_RS19905 (FZN32_20395) - 4099347..4100123 (-) 777 WP_001513438.1 ABC transporter permease -
  FZN32_RS19910 (FZN32_20400) kpsS 4100279..4101505 (-) 1227 WP_001161828.1 capsular biosynthesis protein Regulator
  FZN32_RS19915 (FZN32_20405) - 4101540..4103567 (-) 2028 WP_016239078.1 capsular polysaccharide biosynthesis protein -
  FZN32_RS19920 (FZN32_20410) kdsB 4103564..4104304 (-) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FZN32_RS19925 (FZN32_20415) - 4104314..4105990 (-) 1677 WP_001329578.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 48551.90 Da        Isoelectric Point: 10.0609

>NTDB_id=336963 FZN32_RS19910 WP_001161828.1 4100279..4101505(-) (kpsS) [Escherichia coli strain NMBU-W13E19]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYQAYNQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWNEARCWVRAYWRKQLYRVTQRNVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNSLYDIVDLTYQGTLDDFWLTKFKPDIKLFKKFKEYLLFKTQINHVFYGNEKINKSINI
NSFIGSHK

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=336963 FZN32_RS19910 WP_001161828.1 4100279..4101505(-) (kpsS) [Escherichia coli strain NMBU-W13E19]
ATGCAAGGTAATGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTGTTCAACGGCGGTGATCGTTTTTACTGCC
GCAATCGACAATACCAGGCTTACAACCAAACGCCGAAAGAATTTCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTACACAAAGAAGCAAAACGGTGGGCTAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCAC
TACCGCGCGATCCTGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGAATGAGGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAGGGTAACACAGCGTA
ATGTATTGCCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAGCCACTGAAAGTTATGGGAAATTCTCTTTATGATAT
CGTTGACTTAACATACCAAGGAACATTAGATGACTTCTGGTTAACAAAATTCAAACCAGACATAAAGTTGTTTAAAAAAT
TTAAAGAGTATTTATTGTTTAAAACACAAATAAATCATGTTTTTTATGGAAACGAGAAAATAAATAAGAGCATAAATATC
AATAGTTTTATTGGTTCACACAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.487

95.588

0.377

Multiple sequence alignment