Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FY406_RS08195 Genome accession   NZ_CP043405
Coordinates   1637585..1639360 (+) Length   591 a.a.
NCBI ID   WP_003088033.1    Uniprot ID   A0ABP2QXG5
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632585..1644360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08180 (FY406_08180) - 1633483..1635351 (+) 1869 WP_003088028.1 ABC-F family ATP-binding cassette domain-containing protein -
  FY406_RS08185 (FY406_08185) - 1635351..1635824 (+) 474 WP_003088029.1 GNAT family N-acetyltransferase -
  FY406_RS08190 (FY406_08190) rcrP 1635840..1637576 (+) 1737 WP_003088031.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08195 (FY406_08195) rcrQ 1637585..1639360 (+) 1776 WP_003088033.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08200 (FY406_08200) - 1639469..1640389 (+) 921 WP_003088035.1 AEC family transporter -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 66377.77 Da        Isoelectric Point: 6.4286

>NTDB_id=336873 FY406_RS08195 WP_003088033.1 1637585..1639360(+) (rcrQ) [Streptococcus ratti strain ATCC 31377]
MKQKNIFLRLWQYLKIYKSSLFLAIFLKILSSVMNVLEPFVLGLVMTELTANLLDMARGVNGAHINTAYIFSVLLLYFIR
GLLYSIGSYGSNYFMTNAVQKSIRDLRQDLNEKINKIPVSYFDKHQFGDMLGRFTNDVETVSNALQQSFLQIINAFLTII
LVIAMVLSLNLPLAMIVIACIPLTYFSARFILKKSQPYFKKQANTLGDMNSFVQENLTGFNVIKLYGREEVSAADFRDIT
ENLRNVGFKASFISGTMMPVLNAISDGAYLIVAVVGGLQVLAGKLTIGNLQAFVQYIWQVSQPIQTITQLSGVLQSAKSS
LERIFEVLDEENEISQPSEKLEHDLTGQVSFRDVSFQYTPDKPLIRHFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTQGAIEVDGHDIRHLSRQDYRQQFGMVLQDAWLYEGTIKENLRFGNLNASDDDIVEAAKAANVDHFIRTLPGGYNMEIN
QESNNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMAKLMEGRTSFVIAHRLSTIQEADKILVLKDGK
IIEQGNHQSLLADRGFYYDLYMSQFSQSAEA

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=336873 FY406_RS08195 WP_003088033.1 1637585..1639360(+) (rcrQ) [Streptococcus ratti strain ATCC 31377]
ATGAAACAGAAAAATATTTTTCTTCGCTTGTGGCAATACTTAAAAATTTATAAAAGTTCGCTTTTTCTTGCTATTTTTCT
TAAAATTCTCAGCTCTGTCATGAATGTCCTCGAACCTTTTGTTCTAGGGCTTGTGATGACAGAGCTGACAGCTAATCTGC
TCGATATGGCCAGAGGTGTCAACGGAGCTCATATCAATACGGCTTATATTTTTAGCGTTTTGCTGCTCTATTTTATCCGC
GGGCTCCTCTACAGTATCGGTTCTTATGGCTCCAACTATTTTATGACCAATGCTGTGCAGAAAAGTATCCGTGATTTACG
TCAGGATTTGAATGAAAAAATCAACAAGATTCCAGTCTCTTACTTTGACAAGCATCAATTTGGAGATATGCTGGGCCGCT
TTACCAATGATGTCGAAACAGTTTCAAATGCTTTGCAGCAGAGTTTTTTGCAGATCATTAATGCTTTTTTGACCATTATT
TTAGTGATTGCTATGGTTCTCAGTCTTAACCTGCCTTTGGCTATGATTGTTATTGCCTGCATTCCTTTGACCTATTTCAG
CGCCCGTTTCATTTTGAAAAAATCCCAGCCTTATTTTAAAAAGCAGGCTAATACGCTGGGAGATATGAACAGCTTTGTTC
AGGAAAATTTGACAGGTTTTAATGTCATCAAACTCTATGGCCGTGAAGAAGTATCTGCGGCAGATTTTCGTGATATTACG
GAAAATTTGCGCAATGTCGGTTTCAAAGCAAGCTTTATCTCGGGTACCATGATGCCAGTGCTCAATGCTATTTCAGATGG
GGCTTATCTGATTGTTGCAGTTGTGGGCGGTTTGCAGGTATTGGCAGGAAAGCTGACTATTGGCAACCTGCAGGCTTTTG
TACAGTATATTTGGCAGGTCAGTCAGCCGATTCAGACAATCACCCAGCTATCGGGTGTTTTGCAGAGTGCTAAATCATCT
TTGGAGCGTATTTTTGAAGTTCTGGATGAAGAAAATGAAATCAGTCAGCCAAGTGAAAAACTAGAGCATGATTTGACCGG
GCAGGTCAGCTTTCGGGATGTCTCTTTCCAATACACACCGGATAAACCACTTATCCGTCATTTTAATCTGGATGTTAAAC
CTGGTGAAATGGTTGCTATTGTTGGTCCGACAGGTGCCGGTAAGACAACTTTGATTAATCTTTTGATGCGTTTTTACGAT
GTAACGCAGGGTGCCATTGAGGTTGACGGTCATGATATCCGCCATCTGTCGCGTCAGGACTACCGTCAGCAATTTGGTAT
GGTTTTGCAAGATGCCTGGCTCTACGAAGGAACGATTAAGGAAAATCTGCGTTTCGGCAATCTAAATGCCAGCGATGATG
ACATTGTTGAAGCAGCCAAAGCAGCCAATGTTGATCATTTTATCCGGACGCTTCCGGGCGGCTATAATATGGAAATAAAT
CAGGAATCAAATAATATTTCTCTGGGACAAAAACAGTTATTAACAATTGCCCGGGCTCTTTTAGCTGATCCTAAGATTCT
TATTTTGGATGAAGCGACCTCATCTGTTGACACACGTTTGGAACTGTTGATTCAAAAAGCGATGGCTAAGCTCATGGAAG
GTCGGACCAGCTTTGTTATTGCCCATCGTCTCTCAACCATTCAGGAAGCTGATAAAATCCTTGTTTTAAAAGACGGGAAA
ATCATTGAGCAAGGGAACCATCAAAGCTTGCTAGCTGATAGAGGTTTCTATTATGATCTGTACATGAGCCAGTTCAGCCA
ATCGGCAGAAGCTTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-303)

ABC transporter (ABC_tran)

(367-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.088

100

0.442

Multiple sequence alignment