Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FY406_RS08190 Genome accession   NZ_CP043405
Coordinates   1635840..1637576 (+) Length   578 a.a.
NCBI ID   WP_003088031.1    Uniprot ID   A0ABN0GUB7
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630840..1642576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08170 (FY406_08170) dapB 1631512..1632279 (+) 768 WP_003088024.1 4-hydroxy-tetrahydrodipicolinate reductase -
  FY406_RS08175 (FY406_08175) - 1632276..1633490 (+) 1215 WP_003088026.1 CCA tRNA nucleotidyltransferase -
  FY406_RS08180 (FY406_08180) - 1633483..1635351 (+) 1869 WP_003088028.1 ABC-F family ATP-binding cassette domain-containing protein -
  FY406_RS08185 (FY406_08185) - 1635351..1635824 (+) 474 WP_003088029.1 GNAT family N-acetyltransferase -
  FY406_RS08190 (FY406_08190) rcrP 1635840..1637576 (+) 1737 WP_003088031.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08195 (FY406_08195) rcrQ 1637585..1639360 (+) 1776 WP_003088033.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08200 (FY406_08200) - 1639469..1640389 (+) 921 WP_003088035.1 AEC family transporter -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64750.37 Da        Isoelectric Point: 8.1587

>NTDB_id=336872 FY406_RS08190 WP_003088031.1 1635840..1637576(+) (rcrP) [Streptococcus ratti strain ATCC 31377]
MAYIWSYLKKYPKWLILDVLGAFLFVVVNLGLPTALARMIDQGITPADKKALYFWALIMFVIVLLGIAGRITLAYASSRL
TTTMIRDMRNDMYDKLQQYSHHEYEKIGVASLVTRMTSDAFVLMQFAEMSLRMGIVTPMMMVSSVIMVLLTSASLAWVVV
VAIPFLILVVYYVAIKTRPLSEKQQRTLDKVNQYVRENLTGLRVIRAFARESFQEERFAQKNSTYENTSSRLFKLTGLTE
ALFVQIIVVMIVAIVYFSLDPLQKSAIKIGDLLAFIEYSFHALFSFLIFANIFTMYPRMAVSSKRIQEVMAMPISINPNE
GGIVNTQTKGYLEFDNVTFAYPGETESPVLHNISFKAGPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRD
YNLKALRQKIGFIPQRALLFTGTIGENLKYGKEDATLSELDLAAEVAQAKEFIESRKEKFDTHLAEGGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDAQLRARLKEITGQATVLIVAQRVGTIMDADQIVVLDEGEIVGRGTHDELMKSNE
IYREIANSQLDNHSLTEG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=336872 FY406_RS08190 WP_003088031.1 1635840..1637576(+) (rcrP) [Streptococcus ratti strain ATCC 31377]
ATGGCTTATATTTGGTCTTATTTGAAAAAGTATCCTAAATGGCTGATATTGGATGTTTTAGGTGCTTTTTTATTTGTTGT
GGTGAATTTAGGCCTGCCGACTGCTTTGGCTCGAATGATTGACCAAGGCATCACGCCGGCTGATAAAAAGGCTCTTTATT
TTTGGGCTCTTATTATGTTTGTTATTGTTTTGCTTGGCATAGCAGGGCGGATTACACTAGCTTATGCTTCGAGCAGACTG
ACAACAACAATGATTAGGGATATGCGAAATGATATGTATGACAAACTGCAGCAGTATTCTCACCACGAATATGAAAAAAT
CGGTGTCGCTTCCTTAGTAACGCGTATGACTAGCGATGCCTTTGTTCTCATGCAGTTTGCTGAAATGTCCCTACGAATGG
GAATTGTGACTCCCATGATGATGGTCTCCAGTGTTATTATGGTTCTTTTGACCAGCGCATCATTGGCCTGGGTTGTCGTT
GTTGCCATTCCTTTTTTAATTTTGGTTGTTTATTATGTGGCAATTAAAACACGTCCCTTATCTGAGAAGCAGCAAAGGAC
GCTGGATAAGGTTAATCAGTATGTGCGTGAAAACCTTACTGGTCTTAGGGTTATTCGTGCCTTTGCTCGTGAATCTTTTC
AAGAGGAGCGTTTTGCACAAAAAAACAGTACTTATGAAAATACCTCTAGCCGGCTGTTTAAGTTAACCGGTCTGACAGAA
GCTCTTTTTGTCCAGATTATCGTCGTTATGATTGTAGCTATTGTGTACTTTTCACTGGATCCCCTGCAAAAGTCTGCGAT
TAAGATTGGCGATCTTCTTGCTTTTATTGAATATAGCTTTCATGCCCTTTTTTCCTTTCTGATATTTGCCAATATTTTCA
CCATGTATCCGCGGATGGCTGTATCCAGCAAACGCATTCAGGAAGTAATGGCTATGCCCATTTCAATTAATCCTAATGAA
GGCGGCATTGTTAATACCCAAACGAAGGGCTATTTGGAGTTTGACAATGTTACCTTTGCCTATCCCGGAGAGACTGAAAG
TCCTGTTTTGCATAATATCAGCTTTAAAGCTGGTCCGGGTGAGACTATTGCTTTTATTGGCAGTACAGGTTCGGGAAAAT
CATCATTGGTTAATCTGATTCCACGATTTTATGATGTGACCTTGGGCAAAATTCTCGTTGACGGCGTTGATGTCCGTGAT
TATAATTTGAAAGCTCTGCGCCAGAAAATCGGATTTATTCCGCAGCGAGCCCTGCTTTTTACCGGAACTATCGGTGAGAA
TCTTAAGTATGGCAAAGAAGATGCTACTCTGTCTGAATTGGATTTGGCAGCTGAGGTAGCTCAGGCTAAAGAGTTCATTG
AAAGCCGAAAAGAAAAATTTGATACCCATTTAGCCGAAGGCGGCAGCAACCTCTCAGGCGGTCAGAAGCAGCGCTTATCC
ATTGCTCGGGCTGTCGTTAAAAAGCCAGATATCTATATTTTTGATGACTCTTTCTCAGCTCTGGATTATAAGACAGACGC
TCAGCTGCGGGCACGTCTGAAAGAAATAACGGGCCAAGCTACCGTTTTAATTGTCGCCCAGCGTGTTGGAACCATTATGG
ATGCTGATCAGATTGTTGTCTTGGATGAAGGTGAAATTGTCGGCCGAGGAACCCATGATGAGCTGATGAAGTCCAATGAG
ATATACCGCGAAATTGCTAATTCGCAGCTTGATAATCATAGTTTGACAGAAGGTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(16-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.502

97.232

0.384

Multiple sequence alignment