Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FY406_RS05620 Genome accession   NZ_CP043405
Coordinates   1132594..1133076 (-) Length   160 a.a.
NCBI ID   WP_003086424.1    Uniprot ID   A0ABN0GXX3
Organism   Streptococcus ratti strain ATCC 31377     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127594..1138076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS05595 (FY406_05595) - 1128110..1128631 (+) 522 WP_003086415.1 DUF1273 domain-containing protein -
  FY406_RS05600 (FY406_05600) gpsB 1128737..1129075 (+) 339 WP_003086417.1 cell division regulator GpsB -
  FY406_RS05610 (FY406_05610) - 1129521..1130675 (+) 1155 WP_003086418.1 class I SAM-dependent RNA methyltransferase -
  FY406_RS05615 (FY406_05615) - 1130693..1132378 (+) 1686 WP_003086421.1 cell division site-positioning protein MapZ family protein -
  FY406_RS05620 (FY406_05620) luxS 1132594..1133076 (-) 483 WP_003086424.1 S-ribosylhomocysteine lyase Regulator
  FY406_RS05625 (FY406_05625) - 1133220..1134827 (+) 1608 WP_003086425.1 ribonuclease Y -
  FY406_RS05630 (FY406_05630) gmk 1135201..1135827 (+) 627 WP_003086427.1 guanylate kinase -
  FY406_RS05635 (FY406_05635) rpoZ 1135851..1136168 (+) 318 WP_003091116.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17861.40 Da        Isoelectric Point: 5.2450

>NTDB_id=336858 FY406_RS05620 WP_003086424.1 1132594..1133076(-) (luxS) [Streptococcus ratti strain ATCC 31377]
MSKKVIVESFELDHTAVKAPYVRLISEDQGPKGDVITNFDIRLVQPNADAIPTAGLHTIEHLLAKLIRERIDGMIDCSPF
GCRTGFHLIMWGRHTTTEIAQVIKSSLEEIVQATSWEDVPGTTIESCGNYKDHSLFSAKEWSALILEQGISDAPFERRLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=336858 FY406_RS05620 WP_003086424.1 1132594..1133076(-) (luxS) [Streptococcus ratti strain ATCC 31377]
ATGTCTAAAAAAGTTATTGTTGAAAGTTTTGAACTGGACCATACAGCCGTAAAAGCCCCTTATGTCCGCCTCATTTCAGA
AGATCAGGGGCCAAAGGGCGATGTGATCACTAACTTTGATATCCGTTTGGTGCAGCCCAATGCAGATGCCATTCCAACCG
CCGGCCTTCATACTATTGAACATTTGCTGGCTAAGCTCATCCGCGAACGAATTGACGGTATGATTGACTGCTCTCCCTTT
GGCTGCCGCACCGGTTTTCATCTTATTATGTGGGGCCGGCACACTACAACAGAAATTGCCCAAGTTATCAAGTCCAGTTT
AGAAGAAATCGTTCAAGCTACTTCTTGGGAAGATGTACCCGGAACAACTATTGAATCCTGCGGAAACTACAAGGATCACA
GCCTCTTTTCCGCTAAGGAATGGTCAGCTCTTATTCTTGAGCAGGGCATTTCCGATGCCCCCTTTGAACGCCGCCTCGTC
TGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.667

93.75

0.363