Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FY406_RS03020 Genome accession   NZ_CP043405
Coordinates   625637..626398 (+) Length   253 a.a.
NCBI ID   WP_003086997.1    Uniprot ID   A0ABN0GWF5
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 620637..631398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS03000 (FY406_03000) mreD 621305..621826 (+) 522 WP_003087007.1 rod shape-determining protein MreD -
  FY406_RS03005 (FY406_03005) - 621923..623284 (+) 1362 WP_003087004.1 CHAP domain-containing protein -
  FY406_RS03010 (FY406_03010) - 623412..624380 (+) 969 WP_003087001.1 ribose-phosphate diphosphokinase -
  FY406_RS03015 (FY406_03015) - 624472..625647 (+) 1176 WP_003086998.1 pyridoxal phosphate-dependent aminotransferase -
  FY406_RS03020 (FY406_03020) recO 625637..626398 (+) 762 WP_003086997.1 DNA repair protein RecO Machinery gene
  FY406_RS03025 (FY406_03025) plsX 626525..627523 (+) 999 WP_003086987.1 phosphate acyltransferase PlsX -
  FY406_RS03030 (FY406_03030) - 627525..627764 (+) 240 WP_003086986.1 acyl carrier protein -
  FY406_RS03035 (FY406_03035) purC 627890..628597 (+) 708 WP_003086984.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29450.83 Da        Isoelectric Point: 6.0400

>NTDB_id=336820 FY406_RS03020 WP_003086997.1 625637..626398(+) (recO) [Streptococcus ratti strain ATCC 31377]
MQTKETRGLVLYNRPFREDDKLVKIFTESSGKHMFFVRHAGNSKLSSVIQPLTVADFILKINDTGLSYIEDYKEVSLFKE
INADIYKLAYASYLVALTDAALPDASFDASLFAFLVKTLELMDEGLDYEILTNIFEIQILERFGVQLNFHECCICHRVGL
AFDFSHRYSGLLCPEHYEKDEHRSHLDPNVPYLLDRFQSLRFEDLKTISVKSEMKRKLRTFIDALYEDYVGLHLKSKKFI
DDLDKWGSVMKKD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=336820 FY406_RS03020 WP_003086997.1 625637..626398(+) (recO) [Streptococcus ratti strain ATCC 31377]
ATGCAGACTAAGGAAACCAGAGGTTTAGTGCTTTACAACCGCCCTTTCCGTGAGGACGATAAACTAGTCAAAATTTTTAC
GGAAAGTTCAGGCAAGCATATGTTTTTTGTGCGCCATGCCGGCAATTCAAAGCTGTCCTCGGTTATTCAGCCGCTGACTG
TGGCTGATTTCATCTTAAAGATTAACGATACAGGACTTTCTTATATAGAGGATTATAAGGAAGTTTCTCTTTTTAAGGAA
ATTAATGCCGATATTTATAAATTGGCCTATGCTAGCTACCTTGTGGCTTTGACAGATGCTGCCCTTCCAGATGCCAGCTT
TGATGCCAGTCTTTTTGCCTTTCTGGTTAAAACATTGGAGTTAATGGATGAGGGTCTTGATTATGAAATCCTGACGAATA
TCTTTGAAATTCAGATTTTGGAACGTTTTGGCGTTCAGCTCAATTTTCATGAATGCTGTATTTGCCACCGTGTGGGTTTG
GCTTTTGACTTTTCTCACCGTTATTCTGGATTGCTGTGTCCGGAACATTATGAAAAAGATGAGCATCGCAGTCACTTGGA
TCCTAATGTGCCTTATTTATTGGATCGTTTTCAGTCTCTTCGTTTCGAGGATTTAAAGACTATTTCTGTAAAATCAGAAA
TGAAGAGAAAGCTTCGAACCTTCATTGATGCGCTTTATGAAGATTATGTGGGCCTTCATCTAAAAAGTAAAAAATTCATT
GATGACCTGGACAAATGGGGTAGTGTCATGAAAAAGGATTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-76)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.822

100

0.648