Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBR47_RS01185 Genome accession   NC_012491
Coordinates   203935..205302 (+) Length   455 a.a.
NCBI ID   WP_012683958.1    Uniprot ID   C0ZIE8
Organism   Brevibacillus brevis NBRC 100599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198935..210302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS01165 (BBR47_01850) - 199219..199683 (+) 465 WP_012683954.1 CtsR family transcriptional regulator -
  BBR47_RS01170 (BBR47_01860) - 199700..200218 (+) 519 WP_012683955.1 UvrB/UvrC motif-containing protein -
  BBR47_RS01175 (BBR47_01870) - 200238..201311 (+) 1074 WP_012683956.1 protein arginine kinase -
  BBR47_RS01180 (BBR47_01880) - 201378..203828 (+) 2451 WP_041749199.1 ATP-dependent Clp protease ATP-binding subunit -
  BBR47_RS01185 (BBR47_01890) radA 203935..205302 (+) 1368 WP_012683958.1 DNA repair protein RadA Machinery gene
  BBR47_RS01190 (BBR47_01900) disA 205311..206387 (+) 1077 WP_012683959.1 DNA integrity scanning diadenylate cyclase DisA -
  BBR47_RS01195 (BBR47_01910) pssA 206502..207230 (+) 729 WP_012683960.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  BBR47_RS01200 (BBR47_01920) - 207326..207721 (-) 396 WP_007716195.1 hypothetical protein -
  BBR47_RS01205 (BBR47_01930) - 208008..209096 (+) 1089 WP_012683961.1 PIN/TRAM domain-containing protein -
  BBR47_RS01210 (BBR47_01940) ispD 209124..209810 (+) 687 WP_012683962.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBR47_RS01215 (BBR47_01950) ispF 209814..210287 (+) 474 WP_012683963.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49418.79 Da        Isoelectric Point: 6.8249

>NTDB_id=33675 BBR47_RS01185 WP_012683958.1 203935..205302(+) (radA) [Brevibacillus brevis NBRC 100599]
MSKYKTKYACQECGYESPKWMGKCPGCSSWNTLVEEVTVKTAHRHEGMSGGQRQSAIPLTQVASEEDPRMDTTIGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGAKVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLIEQHI
NQVDPDVLIIDSIQTVFHPTIQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIFLAERPFGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRTATGVDHQRVAMIMAVLEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLDAPADIQVIGVSNIADALNEVIRR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=33675 BBR47_RS01185 WP_012683958.1 203935..205302(+) (radA) [Brevibacillus brevis NBRC 100599]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCAAAATGGATGGGGAAATGCCCGGGATG
CAGCAGTTGGAACACCCTGGTAGAGGAAGTGACGGTAAAAACTGCACATCGTCACGAAGGGATGAGTGGCGGCCAGCGTC
AATCTGCTATTCCACTGACCCAGGTAGCCAGTGAAGAAGACCCACGCATGGATACGACGATCGGAGAATTGAATCGTGTT
CTTGGTGGAGGACTTGTTCCGGGTTCACTCATTTTGGTTGGGGGAGACCCTGGAATCGGGAAATCGACATTGCTTTTGCA
AACTTCTTTTGCCTTGGCTCATCAAGGGGCGAAGGTTCTCTATGTATCTGGAGAGGAGTCGGCAAAACAAATCAAAATTC
GCGCGGATCGACTCCATTTGCAAACGCCGCCGATGTTTGTATTGGCAGAAAATGATTTGGATTTGATCGAACAGCATATT
AATCAAGTAGACCCGGATGTTCTGATTATTGACTCGATCCAGACCGTGTTTCACCCGACGATCCAATCGGCAGCGGGGAG
TGTCGCACAAGTGCGGGAGGCAACAGCCCAATTGATGCGGATTGCAAAAGGGAAAGGGATTGGTACCTTCATCGTCGGTC
ACGTAACCAAGGAAGGCTCCATCGCCGGTCCGCGTATGCTTGAGCACATGGTGGATGCTGTTCTCTATTTTGAAGGGGAG
CGTCACAATACGTTTCGAATTTTGCGTGCCGTCAAAAACCGTTTTGGTTCGACAAACGAAATCGGTATTTTCGAGATGAA
GGATCGCGGTCTGGAGGAAGTGGCGAATCCATCTGAGATATTTTTGGCAGAGCGTCCATTTGGTGTTGCGGGTTCCACAG
TCGTAGCCAGTATGGAGGGCACACGTCCCGTTTTGGTTGAGCTACAAGCTCTCGTTGCCCCGACCAGCTTTGTAACCCCA
CGGAGAACGGCAACAGGGGTCGATCATCAGCGTGTGGCGATGATCATGGCGGTGTTGGAAAAGCGCATGGGCATGATGCT
GCAAAATCAGGATGCTTATGTAAACGTAGCAGGTGGGGTCAGATTAGATGAGCCAGCGGTTGATTTGGCGATTGCCGTAA
GCATTGCAAGCAGTTTCCGTGACCACGCTACCAATCCGCATGATGTCGTTATCGGAGAAATTGGCTTGACTGGTGAGGTG
CGCGGTGTCTCCCGTATTGAGCAACGAGTACGAGAAGCCCATAAATTAGGCTTTAAGCGTGTCATCATACCGGAGAAAAA
CATCCGCGGGCTGGATGCGCCAGCAGATATTCAAGTAATTGGTGTGAGCAATATCGCCGATGCGTTGAACGAGGTGATAA
GGAGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0ZIE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.708

99.341

0.653
  radA Streptococcus mitis NCTC 12261

58.057

99.56

0.578
  radA Streptococcus pneumoniae Rx1

58.057

99.56

0.578
  radA Streptococcus pneumoniae D39

58.057

99.56

0.578
  radA Streptococcus pneumoniae R6

58.057

99.56

0.578
  radA Streptococcus pneumoniae TIGR4

58.057

99.56

0.578
  radA Streptococcus mitis SK321

58.057

99.56

0.578

Multiple sequence alignment