Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQH45_RS09910 Genome accession   NZ_CP035235
Coordinates   1935229..1936182 (-) Length   317 a.a.
NCBI ID   WP_000345086.1    Uniprot ID   A0A064C057
Organism   Streptococcus pneumoniae strain TVO_1902276     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1930229..1941182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH45_RS09885 (EQH45_10410) - 1930990..1931613 (-) 624 WP_000932635.1 hypothetical protein -
  EQH45_RS09890 (EQH45_10415) jag 1931664..1932650 (-) 987 WP_000260009.1 RNA-binding cell elongation regulator Jag/EloR -
  EQH45_RS09895 (EQH45_10420) - 1932669..1933493 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH45_RS09900 (EQH45_10425) rnpA 1933468..1933839 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH45_RS11110 - 1933856..1933987 (-) 132 WP_000768904.1 hypothetical protein -
  EQH45_RS09905 (EQH45_10430) - 1933988..1935178 (-) 1191 WP_000167768.1 acetate kinase -
  EQH45_RS09910 (EQH45_10435) comYH 1935229..1936182 (-) 954 WP_000345086.1 class I SAM-dependent methyltransferase Machinery gene
  EQH45_RS09915 (EQH45_10440) - 1936243..1936837 (-) 595 Protein_1955 class I SAM-dependent methyltransferase -
  EQH45_RS09920 (EQH45_10445) comGG/cglG 1936940..1937386 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH45_RS09925 (EQH45_10450) comGF/cglF 1937364..1937825 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH45_RS09930 (EQH45_10455) comGE/cglE 1937788..1938090 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH45_RS09935 (EQH45_10460) comGD/cglD 1938053..1938457 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH45_RS09940 (EQH45_10465) comGC/cglC 1938450..1938776 (-) 327 WP_000738621.1 comG operon protein ComGC Machinery gene
  EQH45_RS09945 (EQH45_10470) comGB/cglB 1938778..1939794 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH45_RS09950 (EQH45_10475) comGA/cglA/cilD 1939742..1940683 (-) 942 WP_000249568.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH45_RS09955 (EQH45_10480) - 1940759..1941124 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35676.86 Da        Isoelectric Point: 4.2270

>NTDB_id=336696 EQH45_RS09910 WP_000345086.1 1935229..1936182(-) (comYH) [Streptococcus pneumoniae strain TVO_1902276]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=336696 EQH45_RS09910 WP_000345086.1 1935229..1936182(-) (comYH) [Streptococcus pneumoniae strain TVO_1902276]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C057

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment