Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SOR_RS00155 Genome accession   NC_015291
Coordinates   29582..30352 (+) Length   256 a.a.
NCBI ID   WP_000616126.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24582..35352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS00130 (SOR_0028) - 24993..25487 (+) 495 WP_013670142.1 beta-class carbonic anhydrase -
  SOR_RS00135 (SOR_0029) - 25700..26668 (+) 969 WP_000010173.1 ribose-phosphate diphosphokinase -
  SOR_RS00140 (SOR_0030) - 26788..27225 (+) 438 WP_000076472.1 CoA-binding protein -
  SOR_RS00145 (SOR_0031) - 27254..28264 (-) 1011 WP_000009124.1 YeiH family protein -
  SOR_RS00150 (SOR_0032) - 28416..29585 (+) 1170 WP_000366403.1 pyridoxal phosphate-dependent aminotransferase -
  SOR_RS00155 (SOR_0033) recO 29582..30352 (+) 771 WP_000616126.1 DNA repair protein RecO Machinery gene
  SOR_RS00160 (SOR_0034) plsX 30349..31341 (+) 993 WP_000717448.1 phosphate acyltransferase PlsX -
  SOR_RS00165 (SOR_0035) - 31347..31583 (+) 237 WP_000136434.1 acyl carrier protein -
  SOR_RS00170 (SOR_0036) - 31905..32081 (+) 177 WP_000180837.1 hypothetical protein -
  SOR_RS10280 (SOR_0037) - 32094..32285 (+) 192 WP_013670143.1 hypothetical protein -
  SOR_RS00175 (SOR_0038) - 32314..32484 (+) 171 WP_000933509.1 H354_08695 family bacteriocin-like peptide -
  SOR_RS00180 (SOR_0039) comA 32801..34954 (+) 2154 WP_000668323.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29781.25 Da        Isoelectric Point: 5.1762

>NTDB_id=33669 SOR_RS00155 WP_000616126.1 29582..30352(+) (recO) [Streptococcus oralis Uo5]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFIKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDSPLFAFLKKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPDHYHEDEKRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKKELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=33669 SOR_RS00155 WP_000616126.1 29582..30352(+) (recO) [Streptococcus oralis Uo5]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTGGTCAAAATTTT
CACCGAGCAGGCTGGCAAACGCATGTTTTTCATCAAACACGCTGGTCAATCTAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGCCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTTTTTGTCATGGCCTATGCTACCTATGTGGCGGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATTCTCCCTTGTTTGCTTTCTTGAAGAAGACTCTGGAGTTGATGGAAGCAGGCATAGATTATCAGGTCTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGGTTGGT
CAGGCCTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGACCATTACCATGAGGACGAGAAACGTTGTCATCT
AAATCCCAACATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAGACCTTGGAGACCATTTCGCTTAAGGCCG
AAATCAAGAAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

95.312

100

0.953

Multiple sequence alignment