Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQH45_RS02625 Genome accession   NZ_CP035235
Coordinates   522974..523705 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1902276     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 517974..528705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH45_RS02595 (EQH45_02765) dnaK 518303..520126 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  EQH45_RS02600 (EQH45_02770) - 520139..520492 (+) 354 WP_000115730.1 hypothetical protein -
  EQH45_RS02605 (EQH45_02775) dnaJ 520697..521833 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EQH45_RS02610 - 521862..522038 (-) 177 WP_001810526.1 hypothetical protein -
  EQH45_RS02615 (EQH45_02780) - 522199..522486 (-) 288 WP_000777753.1 hypothetical protein -
  EQH45_RS02620 (EQH45_02785) - 522496..522906 (-) 411 WP_001278304.1 HIT family protein -
  EQH45_RS02625 (EQH45_02790) pptA 522974..523705 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH45_RS02630 (EQH45_02795) - 523702..524751 (+) 1050 WP_000653771.1 ABC transporter permease -
  EQH45_RS02635 (EQH45_02800) - 524919..525248 (-) 330 WP_000132572.1 hypothetical protein -
  EQH45_RS02640 (EQH45_02805) - 525524..525862 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  EQH45_RS02645 (EQH45_02810) comE/blpR 525867..526604 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  EQH45_RS02650 (EQH45_02815) - 526618..527958 (+) 1341 WP_001099890.1 sensor histidine kinase -
  EQH45_RS02655 (EQH45_02820) blpC 528003..528158 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=336651 EQH45_RS02625 WP_000889923.1 522974..523705(+) (pptA) [Streptococcus pneumoniae strain TVO_1902276]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=336651 EQH45_RS02625 WP_000889923.1 522974..523705(+) (pptA) [Streptococcus pneumoniae strain TVO_1902276]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment