Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   SGGBAA2069_RS11050 Genome accession   NC_015215
Coordinates   2225462..2226175 (+) Length   237 a.a.
NCBI ID   WP_009855151.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2220462..2231175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS11040 (SGGBAA2069_c21710) treC 2221646..2223277 (-) 1632 WP_012962620.1 alpha,alpha-phosphotrehalase -
  SGGBAA2069_RS11045 (SGGBAA2069_c21720) treP 2223292..2225265 (-) 1974 WP_009855149.1 PTS system trehalose-specific EIIBC component -
  SGGBAA2069_RS11050 (SGGBAA2069_c21730) treR 2225462..2226175 (+) 714 WP_009855151.1 trehalose operon repressor Regulator
  SGGBAA2069_RS11055 (SGGBAA2069_c21740) - 2226476..2227303 (-) 828 WP_009855152.1 class C sortase -
  SGGBAA2069_RS11060 (SGGBAA2069_c21750) - 2227491..2228933 (-) 1443 WP_009855153.1 isopeptide-forming domain-containing fimbrial protein -
  SGGBAA2069_RS11065 (SGGBAA2069_c21760) - 2229040..2231016 (-) 1977 WP_009855154.1 Cna B-type domain-containing protein -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27418.41 Da        Isoelectric Point: 7.3315

>NTDB_id=33658 SGGBAA2069_RS11050 WP_009855151.1 2225462..2226175(+) (treR) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MKKYEQIFKELEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLAALTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAYAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=33658 SGGBAA2069_RS11050 WP_009855151.1 2225462..2226175(+) (treR) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGAAAAAATACGAACAAATCTTTAAAGAACTTGAACACGATATCACCTCTGGCATTTACCAAGCAGGTGACTATCTCCC
CACTGAAAACGAGCTAACCCAGACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTTATCCAGAAAATTCACGGTTCTGGCTCTCAAGTCATCAAGCACGAACAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAACTGGTCGACGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTGCGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTACGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGCGCCGAACACCACGTTGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAGAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

72.222

98.734

0.713


Multiple sequence alignment