Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQZ20_RS13335 Genome accession   NZ_CP035232
Coordinates   2560218..2560814 (+) Length   198 a.a.
NCBI ID   WP_046130809.1    Uniprot ID   A0AAE2ENW3
Organism   Bacillus glycinifermentans strain SRCM103574     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2555218..2565814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ20_RS13295 (EQZ20_13295) - 2556240..2556746 (-) 507 WP_046130802.1 PTS glucose transporter subunit IIA -
  EQZ20_RS13300 (EQZ20_13300) - 2556907..2557323 (+) 417 WP_046130803.1 Hsp20/alpha crystallin family protein -
  EQZ20_RS13305 (EQZ20_13305) - 2557346..2557798 (-) 453 WP_046130804.1 YppG family protein -
  EQZ20_RS13310 (EQZ20_13310) - 2557982..2558182 (+) 201 WP_046130805.1 YppF family protein -
  EQZ20_RS13315 (EQZ20_13315) - 2558201..2558575 (-) 375 WP_231947357.1 YppE family protein -
  EQZ20_RS13320 (EQZ20_13320) - 2558639..2558869 (-) 231 WP_046130807.1 DUF5446 family protein -
  EQZ20_RS13325 (EQZ20_13325) sspM 2559070..2559174 (+) 105 WP_046130808.1 acid-soluble spore protein SspM -
  EQZ20_RS13330 (EQZ20_13330) - 2559203..2560153 (-) 951 WP_046130812.1 DUF2515 domain-containing protein -
  EQZ20_RS13335 (EQZ20_13335) recU 2560218..2560814 (+) 597 WP_046130809.1 Holliday junction resolvase RecU Machinery gene
  EQZ20_RS13340 (EQZ20_13340) - 2560872..2563529 (+) 2658 WP_046130810.1 PBP1A family penicillin-binding protein -
  EQZ20_RS13345 (EQZ20_13345) - 2563616..2565171 (+) 1556 WP_231947358.1 IS3 family transposase -
  EQZ20_RS13350 (EQZ20_13350) - 2565233..2565673 (-) 441 WP_231947495.1 YpoC family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22967.12 Da        Isoelectric Point: 9.6582

>NTDB_id=336528 EQZ20_RS13335 WP_046130809.1 2560218..2560814(+) (recU) [Bacillus glycinifermentans strain SRCM103574]
MIRYPNGKTYQPKQAASSLKKKPSYSNRGMTLEDDLNETNIYYLNHSIAVIHKKPTPVQIVHVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSKTSFPLQNFHDHQIEHMKQVVAQGGICFVIISAFGEIYFLEAEKLFNFWERKNRNG
RKSIRKDELEEAGHPISLGYSPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=336528 EQZ20_RS13335 WP_046130809.1 2560218..2560814(+) (recU) [Bacillus glycinifermentans strain SRCM103574]
GTGATTCGTTATCCGAACGGCAAAACCTATCAGCCGAAACAAGCTGCCTCATCCTTAAAAAAGAAGCCGTCGTACAGCAA
TCGCGGGATGACCCTCGAAGACGATTTGAATGAAACGAATATATATTATCTGAATCATTCAATCGCGGTCATTCATAAAA
AACCGACACCTGTGCAGATCGTTCATGTCGATTATCCAAAGCGAAGCGCGGCGGTCATTAAAGAAGCATATTTCAAGCAG
TCGTCGACTACTGATTATAACGGGGTCTATAAAGGACGCTACATCGATTTTGAAGCGAAAGAAACCAAAAGCAAGACGTC
TTTTCCTTTGCAGAATTTCCACGATCACCAGATCGAGCATATGAAGCAGGTCGTGGCACAGGGCGGGATATGCTTTGTTA
TTATATCCGCATTTGGTGAGATTTATTTTTTGGAAGCGGAAAAATTATTTAATTTCTGGGAAAGAAAAAACCGAAACGGC
AGAAAGTCGATCCGAAAAGACGAACTTGAAGAAGCCGGACACCCCATTTCGCTTGGATACTCGCCAAGAATTGATTATAT
TAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.587

100

0.838

Multiple sequence alignment