Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   EQZ20_RS08415 Genome accession   NZ_CP035232
Coordinates   1638113..1638700 (+) Length   195 a.a.
NCBI ID   WP_046132264.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM103574     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633113..1643700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ20_RS08385 (EQZ20_08385) - 1633477..1633929 (+) 453 WP_046132270.1 flavodoxin -
  EQZ20_RS08390 (EQZ20_08390) dapD 1634038..1634748 (+) 711 WP_046132269.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  EQZ20_RS08395 (EQZ20_08395) - 1634817..1635941 (+) 1125 WP_046132268.1 N-acetyldiaminopimelate deacetylase -
  EQZ20_RS08400 (EQZ20_08400) - 1636007..1636252 (+) 246 WP_046132267.1 YkuS family protein -
  EQZ20_RS08405 (EQZ20_08405) ahpA 1636478..1637020 (+) 543 WP_046132266.1 biofilm-specific peroxidase AhpA -
  EQZ20_RS08410 (EQZ20_08410) - 1637108..1637566 (+) 459 WP_046132265.1 redoxin domain-containing protein -
  EQZ20_RS08415 (EQZ20_08415) rok 1638113..1638700 (+) 588 WP_046132264.1 transcriptional regulator Rok Regulator
  EQZ20_RS08420 (EQZ20_08420) - 1638829..1639788 (-) 960 WP_046132263.1 hypothetical protein -
  EQZ20_RS08425 (EQZ20_08425) - 1639940..1640527 (+) 588 WP_046132262.1 molybdenum cofactor guanylyltransferase -
  EQZ20_RS08430 (EQZ20_08430) - 1640646..1641659 (+) 1014 WP_046132261.1 MoeB/ThiF family adenylyltransferase -
  EQZ20_RS08435 (EQZ20_08435) glp 1641678..1642970 (+) 1293 WP_046132260.1 gephyrin-like molybdotransferase Glp -
  EQZ20_RS08440 (EQZ20_08440) mobB 1642937..1643473 (+) 537 WP_046132259.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22518.54 Da        Isoelectric Point: 10.0936

>NTDB_id=336522 EQZ20_RS08415 WP_046132264.1 1638113..1638700(+) (rok) [Bacillus glycinifermentans strain SRCM103574]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNNDTKKDFRTERKTESLPVLAELAAQEMKSYQQQ
QQMQTSQKTQQQTSPQASALPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDISTETEKQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=336522 EQZ20_RS08415 WP_046132264.1 1638113..1638700(+) (rok) [Bacillus glycinifermentans strain SRCM103574]
ATGTTTAACGAGAGGGAAGCATTGCGTTTACGATTGGAGCAGCTAAATGAAGCTGAGGTTAAGGTCATTAGGGAGTATCA
AATTGAGCGTGACAATATATATGCAAAGCTGCGTGAATTGGATCGCCCATCCAGCTTTAATAACGATACAAAAAAAGATT
TTCGCACAGAGCGAAAAACCGAATCGCTCCCTGTTTTAGCTGAATTAGCTGCACAGGAGATGAAAAGCTATCAACAGCAG
CAACAGATGCAGACATCTCAAAAAACTCAGCAGCAGACTTCTCCGCAAGCTTCCGCACTGCCTGCCGGAATTCCAGACGG
TACAACGCGGCGCAGAAGGGGGACGGCACGTCCGGGTTCAAAAGCTGCAAAACTGCGTGAAGCGGCGATTAAAACGTTGA
AGCGTCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAAATTGAAAAAGAAAGCGGGCTTGAAATTCCGAATATG
ACAACCTTCATGCAAAGTCTCATTAAAATGTATCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGGAGA
CATATCTACCGAAACAGAAAAACAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.158

97.436

0.81

Multiple sequence alignment