Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EQZ20_RS08320 Genome accession   NZ_CP035232
Coordinates   1622910..1623371 (-) Length   153 a.a.
NCBI ID   WP_046132282.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM103574     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1621426..1622778 1622910..1623371 flank 132


Gene organization within MGE regions


Location: 1621426..1623371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ20_RS08315 (EQZ20_08315) - 1621426..1622778 (+) 1353 WP_046131917.1 IS1182 family transposase -
  EQZ20_RS08320 (EQZ20_08320) kre 1622910..1623371 (-) 462 WP_046132282.1 YkyB family protein Regulator

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17601.46 Da        Isoelectric Point: 10.6215

>NTDB_id=336521 EQZ20_RS08320 WP_046132282.1 1622910..1623371(-) (kre) [Bacillus glycinifermentans strain SRCM103574]
MDDHNHTKVLKPTVENLSKAIYTVNRHAKTATDPKYLYLLKKKALQKLINEGKGKKVGLHFSKNPKFSQQQSDVLISLGD
YFFHMPPTKEDFDNLPHLGTLNHSYRNPKAHMSLNIAKQLLQKYTGLKEKPLVTNRKRPSAKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=336521 EQZ20_RS08320 WP_046132282.1 1622910..1623371(-) (kre) [Bacillus glycinifermentans strain SRCM103574]
ATGGACGACCATAATCATACTAAAGTATTAAAACCAACAGTTGAAAACCTTTCAAAAGCGATTTACACGGTCAATCGCCA
CGCAAAAACCGCGACCGATCCAAAATACCTGTATCTCCTGAAAAAGAAAGCTCTGCAAAAGCTCATCAATGAAGGAAAAG
GAAAAAAGGTAGGACTTCACTTTTCAAAAAACCCAAAGTTCAGCCAGCAGCAGTCAGATGTGCTTATTTCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACTAAAGAAGACTTCGATAACCTTCCGCACTTAGGTACACTAAATCATTCTTATCGGAA
CCCTAAAGCTCATATGTCATTGAACATCGCAAAGCAGCTTCTGCAGAAATACACGGGATTGAAGGAAAAGCCGCTTGTCA
CGAACAGGAAGCGCCCTTCGGCAAAGCCTGTATTCAAGAAGCTTGGCGAAAGCTATTTTTGA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

80.519

100

0.81

Multiple sequence alignment