Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQZ20_RS00265 Genome accession   NZ_CP035232
Coordinates   49033..49326 (-) Length   97 a.a.
NCBI ID   WP_087962552.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM103574     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 44033..54326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ20_RS00225 (EQZ20_00225) - 44041..44370 (+) 330 WP_046131743.1 cyclic-di-AMP receptor -
  EQZ20_RS00230 (EQZ20_00230) - 44382..44822 (+) 441 WP_046131742.1 YaaR family protein -
  EQZ20_RS00235 (EQZ20_00235) holB 44834..45823 (+) 990 WP_046131741.1 DNA polymerase III subunit delta' -
  EQZ20_RS00240 (EQZ20_00240) - 45826..46653 (+) 828 WP_046131740.1 stage 0 sporulation family protein -
  EQZ20_RS00245 (EQZ20_00245) yabA 46668..47030 (+) 363 WP_046131739.1 DNA replication initiation control protein YabA -
  EQZ20_RS00250 (EQZ20_00250) - 47113..47856 (+) 744 WP_046131738.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EQZ20_RS00255 (EQZ20_00255) - 47843..48136 (+) 294 WP_046131737.1 GIY-YIG nuclease family protein -
  EQZ20_RS00260 (EQZ20_00260) rsmI 48111..48986 (+) 876 WP_046131748.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EQZ20_RS00265 (EQZ20_00265) abrB 49033..49326 (-) 294 WP_087962552.1 transition state genes transcriptional regulator AbrB Regulator
  EQZ20_RS00270 (EQZ20_00270) metG 49833..51821 (+) 1989 WP_046131736.1 methionine--tRNA ligase -
  EQZ20_RS00275 (EQZ20_00275) - 51910..52677 (+) 768 WP_046131735.1 TatD family hydrolase -
  EQZ20_RS00280 (EQZ20_00280) - 52921..54120 (+) 1200 WP_046131734.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10779.57 Da        Isoelectric Point: 5.1848

>NTDB_id=336500 EQZ20_RS00265 WP_087962552.1 49033..49326(-) (abrB) [Bacillus glycinifermentans strain SRCM103574]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSLKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=336500 EQZ20_RS00265 WP_087962552.1 49033..49326(-) (abrB) [Bacillus glycinifermentans strain SRCM103574]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGACGAACTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGCGAAGTTTCTGATGACAACCTTAAACTTGCCGGCGGTAAACTGGTTCTTAGCCCAGAAGGC
GCTGAGCAAATCATCAATGAAATTCAAGCACAGCTTCAATCTCTAAAAAATTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

98.969

0.938

Multiple sequence alignment