Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EQZ01_RS12565 Genome accession   NZ_CP035231
Coordinates   2416741..2417544 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2411741..2422544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS12540 (EQZ01_12540) glpQB 2412878..2413609 (-) 732 WP_128738011.1 glycerophosphodiester phosphodiesterase -
  EQZ01_RS12545 (EQZ01_12545) yqiI 2413688..2414308 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  EQZ01_RS12550 (EQZ01_12550) - 2414328..2414624 (-) 297 WP_014480225.1 hypothetical protein -
  EQZ01_RS12555 (EQZ01_12555) - 2414932..2415084 (+) 153 WP_014480226.1 hypothetical protein -
  EQZ01_RS12560 (EQZ01_12560) yqiG 2415157..2416275 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  EQZ01_RS12565 (EQZ01_12565) spo0A 2416741..2417544 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  EQZ01_RS12575 (EQZ01_12575) spoIVB 2417820..2419100 (-) 1281 WP_086344063.1 SpoIVB peptidase -
  EQZ01_RS12580 (EQZ01_12580) recN 2419275..2421005 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  EQZ01_RS12585 (EQZ01_12585) argR 2421042..2421491 (-) 450 WP_003230265.1 arginine repressor ArgR -
  EQZ01_RS12590 (EQZ01_12590) yqxC 2421589..2422434 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=336455 EQZ01_RS12565 WP_003226427.1 2416741..2417544(-) (spo0A) [Bacillus subtilis strain SRCM103571]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=336455 EQZ01_RS12565 WP_003226427.1 2416741..2417544(-) (spo0A) [Bacillus subtilis strain SRCM103571]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment