Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQZ01_RS11545 Genome accession   NZ_CP035231
Coordinates   2236055..2236675 (+) Length   206 a.a.
NCBI ID   WP_024571847.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2231055..2241675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS11505 (EQZ01_11505) ptsA 2232186..2232692 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  EQZ01_RS11510 (EQZ01_11510) ypqA 2232830..2233249 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  EQZ01_RS11515 (EQZ01_11515) sppG 2233270..2233647 (-) 378 WP_014477159.1 YppG family protein -
  EQZ01_RS11520 (EQZ01_11520) yppF 2233835..2234023 (+) 189 WP_003230690.1 YppF family protein -
  EQZ01_RS11525 (EQZ01_11525) yppE 2234062..2234433 (-) 372 WP_063335219.1 YppE family protein -
  EQZ01_RS11530 (EQZ01_11530) yppD 2234479..2234724 (-) 246 WP_015251831.1 YppD family protein -
  EQZ01_RS11535 (EQZ01_11535) sspM 2234923..2235027 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  EQZ01_RS11540 (EQZ01_11540) yppC 2235052..2236014 (-) 963 WP_029878384.1 DUF2515 domain-containing protein -
  EQZ01_RS11545 (EQZ01_11545) recU 2236055..2236675 (+) 621 WP_024571847.1 Holliday junction resolvase RecU Machinery gene
  EQZ01_RS11550 (EQZ01_11550) ponA 2236697..2239441 (+) 2745 WP_128737977.1 PBP1A family penicillin-binding protein -
  EQZ01_RS11555 (EQZ01_11555) ypoC 2239517..2240011 (-) 495 WP_009967579.1 YpoC family protein -
  EQZ01_RS11560 (EQZ01_11560) nth 2240008..2240667 (-) 660 WP_009967580.1 endonuclease III -
  EQZ01_RS11565 (EQZ01_11565) dnaD 2240686..2241384 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23975.09 Da        Isoelectric Point: 9.6240

>NTDB_id=336454 EQZ01_RS11545 WP_024571847.1 2236055..2236675(+) (recU) [Bacillus subtilis strain SRCM103571]
MIRYPNGKTFQPKHSVSSQNSQKRSPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=336454 EQZ01_RS11545 WP_024571847.1 2236055..2236675(+) (recU) [Bacillus subtilis strain SRCM103571]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGTCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAGGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment