Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EQZ01_RS06165 Genome accession   NZ_CP035231
Coordinates   1156398..1156976 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM103571     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151398..1161976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS06145 (EQZ01_06145) hemAT 1151909..1153207 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  EQZ01_RS06150 (EQZ01_06150) comW 1153346..1154875 (-) 1530 WP_014476355.1 FAD-dependent oxidoreductase -
  EQZ01_RS06155 (EQZ01_06155) yhxC 1154987..1155844 (+) 858 WP_128737715.1 SDR family oxidoreductase -
  EQZ01_RS06160 (EQZ01_06160) yhzC 1155872..1156105 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  EQZ01_RS06165 (EQZ01_06165) comK 1156398..1156976 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  EQZ01_RS06170 (EQZ01_06170) yhxD 1157023..1157922 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  EQZ01_RS06175 (EQZ01_06175) yhjA 1158138..1158407 (+) 270 WP_128737716.1 excalibur calcium-binding domain-containing protein -
  EQZ01_RS06180 (EQZ01_06180) yhjB 1158451..1159920 (-) 1470 WP_128737717.1 sodium:solute symporter -
  EQZ01_RS06185 (EQZ01_06185) yhjC 1159917..1160117 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  EQZ01_RS06190 (EQZ01_06190) - 1160316..1160687 (-) 372 WP_014476361.1 hypothetical protein -
  EQZ01_RS06195 (EQZ01_06195) yhjE 1160839..1161462 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  EQZ01_RS06200 (EQZ01_06200) lepB 1161464..1161970 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=336435 EQZ01_RS06165 WP_003245329.1 1156398..1156976(+) (comK) [Bacillus subtilis strain SRCM103571]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=336435 EQZ01_RS06165 WP_003245329.1 1156398..1156976(+) (comK) [Bacillus subtilis strain SRCM103571]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment