Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQZ01_RS00245 Genome accession   NZ_CP035231
Coordinates   44300..44590 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM103571     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39300..49590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS00205 (EQZ01_00205) darA 39323..39652 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  EQZ01_RS00210 (EQZ01_00210) yaaR 39665..40105 (+) 441 WP_009966249.1 YaaR family protein -
  EQZ01_RS00215 (EQZ01_00215) holB 40117..41106 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  EQZ01_RS00220 (EQZ01_00220) ricT 41109..41936 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  EQZ01_RS00225 (EQZ01_00225) yabA 41951..42310 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  EQZ01_RS00230 (EQZ01_00230) trmNF 42369..43112 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EQZ01_RS00235 (EQZ01_00235) yazA 43099..43398 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  EQZ01_RS00240 (EQZ01_00240) rsmI 43373..44251 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EQZ01_RS00245 (EQZ01_00245) abrB 44300..44590 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  EQZ01_RS00250 (EQZ01_00250) metG 45085..47079 (+) 1995 WP_014478594.1 methionine--tRNA ligase -
  EQZ01_RS00255 (EQZ01_00255) dayD 47158..47925 (+) 768 WP_014475570.1 TatD family hydrolase -
  EQZ01_RS00260 (EQZ01_00260) yabE 48081..49394 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=336420 EQZ01_RS00245 WP_003226760.1 44300..44590(-) (abrB) [Bacillus subtilis strain SRCM103571]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=336420 EQZ01_RS00245 WP_003226760.1 44300..44590(-) (abrB) [Bacillus subtilis strain SRCM103571]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment