Detailed information NTG0336358

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FZE14_RS07455
• Genome accession: NZ_CP043328
• Coordinates: 1532185..1533189 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CCUG 51971
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1527185..1538189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FZE14_RS07425 (FZE14_07425)	fghA	1527277..1528128 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
FZE14_RS07430 (FZE14_07430)	ispF	1528199..1528672 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FZE14_RS07435 (FZE14_07435)	truD	1528669..1529736 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
FZE14_RS07440 (FZE14_07440)	surE	1529724..1530473 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
FZE14_RS07445 (FZE14_07445)	-	1530506..1531141 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FZE14_RS07450 (FZE14_07450)	-	1531187..1532080 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
FZE14_RS07455 (FZE14_07455)	rpoS	1532185..1533189 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
FZE14_RS07460 (FZE14_07460)	fdxA	1533616..1533939 (-)	324	WP_003092272.1	ferredoxin FdxA	-
FZE14_RS07465 (FZE14_07465)	mutS	1534006..1536573 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
FZE14_RS07475 (FZE14_07475)	-	1536699..1537706 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=336358 FZE14_RS07455 WP_003113871.1 1532185..1533189(+) (rpoS) [Pseudomonas aeruginosa strain CCUG 51971]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=336358 FZE14_RS07455 WP_003113871.1 1532185..1533189(+) (rpoS) [Pseudomonas aeruginosa strain CCUG 51971]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653