Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EQY74_RS06020 Genome accession   NZ_CP035228
Coordinates   1167639..1168217 (+) Length   192 a.a.
NCBI ID   WP_003180354.1    Uniprot ID   A0A1Y0YMJ8
Organism   Bacillus licheniformis strain SRCM103529     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162639..1173217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY74_RS06000 (EQY74_06000) - 1163141..1164433 (-) 1293 WP_003180349.1 globin-coupled sensor protein -
  EQY74_RS06005 (EQY74_06005) - 1164540..1166069 (-) 1530 WP_003180351.1 FAD-dependent oxidoreductase -
  EQY74_RS06010 (EQY74_06010) - 1166210..1167067 (+) 858 WP_003180352.1 SDR family oxidoreductase -
  EQY74_RS06015 (EQY74_06015) - 1167133..1167366 (-) 234 WP_003180353.1 IDEAL domain-containing protein -
  EQY74_RS06020 (EQY74_06020) comK 1167639..1168217 (+) 579 WP_003180354.1 competence protein ComK Regulator
  EQY74_RS06025 (EQY74_06025) - 1168211..1168576 (-) 366 WP_003180357.1 hypothetical protein -
  EQY74_RS06030 (EQY74_06030) - 1168785..1169396 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  EQY74_RS06035 (EQY74_06035) lepB 1169409..1169927 (+) 519 WP_003180360.1 signal peptidase I -
  EQY74_RS06040 (EQY74_06040) - 1170082..1171857 (-) 1776 WP_003180361.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.65 Da        Isoelectric Point: 8.6274

>NTDB_id=336274 EQY74_RS06020 WP_003180354.1 1167639..1168217(+) (comK) [Bacillus licheniformis strain SRCM103529]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=336274 EQY74_RS06020 WP_003180354.1 1167639..1168217(+) (comK) [Bacillus licheniformis strain SRCM103529]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterProScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment