Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FYK54_RS22060 Genome accession   NZ_CP043295
Coordinates   4605561..4606988 (-) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC040047     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4600561..4611988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK54_RS22030 (FYK54_22275) yeeZ 4600616..4601440 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  FYK54_RS22035 (FYK54_22280) yeeY 4601486..4602415 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  FYK54_RS22040 (FYK54_22285) yoeI 4602630..4602692 (+) 63 WP_010723108.1 membrane protein YoeI -
  FYK54_RS22045 (FYK54_22290) plaP 4602682..4604040 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FYK54_RS22050 (FYK54_22295) tsuA 4604219..4605277 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  FYK54_RS22055 (FYK54_22300) tsuB 4605291..4605518 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FYK54_RS22060 (FYK54_22305) sbcB 4605561..4606988 (-) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  FYK54_RS22065 (FYK54_22310) dacD 4607197..4608363 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FYK54_RS22070 (FYK54_22315) sbmC 4608482..4608955 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  FYK54_RS22075 (FYK54_22320) yeeA 4609153..4610211 (+) 1059 WP_001200890.1 FUSC family protein -
  FYK54_RS22080 (FYK54_22325) tmaR 4610383..4610712 (+) 330 WP_000450409.1 DUF496 family protein -
  FYK54_RS22085 (FYK54_22330) - 4610813..4610995 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FYK54_RS22090 (FYK54_22335) - 4611049..4611195 (+) 147 Protein_4322 transposase domain-containing protein -
  FYK54_RS22095 (FYK54_22340) - 4611484..4611564 (-) 81 Protein_4323 hypothetical protein -
  FYK54_RS22100 (FYK54_22345) yeeW 4611610..4611804 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=336244 FYK54_RS22060 WP_021523141.1 4605561..4606988(-) (sbcB) [Escherichia coli strain WCHEC040047]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=336244 FYK54_RS22060 WP_021523141.1 4605561..4606988(-) (sbcB) [Escherichia coli strain WCHEC040047]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581