Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQW70_RS17065 Genome accession   NZ_CP035226
Coordinates   3215469..3216113 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3210469..3221113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS17030 (EQW70_17030) mrpB 3211661..3212092 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  EQW70_RS17035 (EQW70_17035) mrpC 3212092..3212433 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  EQW70_RS17040 (EQW70_17040) mrpD 3212426..3213907 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  EQW70_RS17045 (EQW70_17045) mrpE 3213913..3214389 (+) 477 WP_128740687.1 Na+/H+ antiporter subunit E -
  EQW70_RS17050 (EQW70_17050) mrpF 3214389..3214673 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  EQW70_RS17055 (EQW70_17055) mnhG 3214657..3215031 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  EQW70_RS17060 (EQW70_17060) yuxO 3215070..3215450 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  EQW70_RS17065 (EQW70_17065) comA 3215469..3216113 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  EQW70_RS17070 (EQW70_17070) comP 3216194..3218494 (-) 2301 WP_088300729.1 histidine kinase Regulator
  EQW70_RS17075 (EQW70_17075) comX 3218506..3218670 (-) 165 WP_015384519.1 competence pheromone ComX -
  EQW70_RS17080 (EQW70_17080) - 3218683..3219543 (-) 861 WP_128740688.1 polyprenyl synthetase family protein -
  EQW70_RS17085 (EQW70_17085) degQ 3219727..3219867 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  EQW70_RS17090 (EQW70_17090) - 3220089..3220214 (+) 126 WP_003228793.1 hypothetical protein -
  EQW70_RS17095 (EQW70_17095) - 3220328..3220696 (+) 369 WP_116315920.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=336241 EQW70_RS17065 WP_003220716.1 3215469..3216113(-) (comA) [Bacillus subtilis strain SRCM103517]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=336241 EQW70_RS17065 WP_003220716.1 3215469..3216113(-) (comA) [Bacillus subtilis strain SRCM103517]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment