Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EQW70_RS15120 Genome accession   NZ_CP035226
Coordinates   2838142..2838888 (-) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2833142..2843888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS15095 (EQW70_15095) mreC 2833547..2834419 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  EQW70_RS15100 (EQW70_15100) mreB 2834450..2835463 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  EQW70_RS15105 (EQW70_15105) radC 2835555..2836250 (-) 696 WP_021480240.1 DNA repair protein RadC -
  EQW70_RS15110 (EQW70_15110) maf 2836287..2836856 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  EQW70_RS15115 (EQW70_15115) spoIIB 2837010..2838008 (-) 999 WP_128740604.1 stage II sporulation protein SpoIIB -
  EQW70_RS15120 (EQW70_15120) comC 2838142..2838888 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  EQW70_RS15125 (EQW70_15125) folC 2839029..2840321 (-) 1293 WP_128740605.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EQW70_RS15130 (EQW70_15130) valS 2840381..2843023 (-) 2643 WP_128740606.1 valine--tRNA ligase -
  EQW70_RS15135 (EQW70_15135) - 2843471..2843662 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=336236 EQW70_RS15120 WP_021480242.1 2838142..2838888(-) (comC) [Bacillus subtilis strain SRCM103517]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=336236 EQW70_RS15120 WP_021480242.1 2838142..2838888(-) (comC) [Bacillus subtilis strain SRCM103517]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment