Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EQW70_RS13365 Genome accession   NZ_CP035226
Coordinates   2538632..2539435 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2533632..2544435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS13340 (EQW70_13340) glpQB 2534778..2535509 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  EQW70_RS13345 (EQW70_13345) yqiI 2535588..2536208 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  EQW70_RS13350 (EQW70_13350) yqiH 2536223..2536516 (-) 294 WP_003230284.1 lipoprotein -
  EQW70_RS13355 (EQW70_13355) - 2536824..2536976 (+) 153 WP_014480226.1 hypothetical protein -
  EQW70_RS13360 (EQW70_13360) yqiG 2537049..2538167 (+) 1119 WP_128740568.1 NADH-dependent flavin oxidoreductase -
  EQW70_RS13365 (EQW70_13365) spo0A 2538632..2539435 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  EQW70_RS13370 (EQW70_13370) spoIVB 2539711..2540991 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  EQW70_RS13375 (EQW70_13375) recN 2541166..2542896 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  EQW70_RS13380 (EQW70_13380) argR 2542931..2543380 (-) 450 WP_015384067.1 arginine repressor ArgR -
  EQW70_RS13385 (EQW70_13385) yqxC 2543478..2544323 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=336217 EQW70_RS13365 WP_003226427.1 2538632..2539435(-) (spo0A) [Bacillus subtilis strain SRCM103517]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=336217 EQW70_RS13365 WP_003226427.1 2538632..2539435(-) (spo0A) [Bacillus subtilis strain SRCM103517]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment