Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQW70_RS12395 Genome accession   NZ_CP035226
Coordinates   2362739..2363359 (+) Length   206 a.a.
NCBI ID   WP_070547480.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357739..2368359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS12355 (EQW70_12355) ptsA 2358870..2359376 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  EQW70_RS12360 (EQW70_12360) ypqA 2359514..2359933 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  EQW70_RS12365 (EQW70_12365) sppG 2359954..2360331 (-) 378 WP_015251832.1 YppG family protein -
  EQW70_RS12370 (EQW70_12370) yppF 2360519..2360707 (+) 189 WP_003230690.1 YppF family protein -
  EQW70_RS12375 (EQW70_12375) yppE 2360746..2361117 (-) 372 WP_021481525.1 YppE family protein -
  EQW70_RS12380 (EQW70_12380) yppD 2361163..2361408 (-) 246 WP_021481526.1 DUF5446 family protein -
  EQW70_RS12385 (EQW70_12385) sspM 2361607..2361711 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  EQW70_RS12390 (EQW70_12390) yppC 2361736..2362698 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  EQW70_RS12395 (EQW70_12395) recU 2362739..2363359 (+) 621 WP_070547480.1 Holliday junction resolvase RecU Machinery gene
  EQW70_RS12400 (EQW70_12400) ponA 2363381..2366128 (+) 2748 WP_128740546.1 PBP1A family penicillin-binding protein -
  EQW70_RS12405 (EQW70_12405) ypoC 2366204..2366698 (-) 495 WP_009967579.1 YpoC family protein -
  EQW70_RS12410 (EQW70_12410) nth 2366695..2367354 (-) 660 WP_009967580.1 endonuclease III -
  EQW70_RS12415 (EQW70_12415) dnaD 2367373..2368071 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23987.14 Da        Isoelectric Point: 9.6240

>NTDB_id=336216 EQW70_RS12395 WP_070547480.1 2362739..2363359(+) (recU) [Bacillus subtilis strain SRCM103517]
MIRYPNGKTFQPKHSVSSQNSQKRVPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=336216 EQW70_RS12395 WP_070547480.1 2362739..2363359(+) (recU) [Bacillus subtilis strain SRCM103517]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGTCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment