Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EQW70_RS09070 Genome accession   NZ_CP035226
Coordinates   1709048..1709941 (+) Length   297 a.a.
NCBI ID   WP_128740319.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1704048..1714941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS09050 (EQW70_09050) - 1704718..1706448 (+) 1731 WP_021479298.1 hypothetical protein -
  EQW70_RS09055 (EQW70_09055) ylqH 1706445..1706726 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  EQW70_RS09060 (EQW70_09060) sucC 1706899..1708056 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  EQW70_RS09065 (EQW70_09065) sucD 1708085..1708987 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  EQW70_RS09070 (EQW70_09070) dprA 1709048..1709941 (+) 894 WP_128740319.1 DNA-processing protein DprA Machinery gene
  EQW70_RS09075 (EQW70_09075) topA 1710129..1712204 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  EQW70_RS09080 (EQW70_09080) trmFO 1712280..1713587 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQW70_RS09085 (EQW70_09085) xerC 1713655..1714569 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32890.18 Da        Isoelectric Point: 9.9142

>NTDB_id=336212 EQW70_RS09070 WP_128740319.1 1709048..1709941(+) (dprA) [Bacillus subtilis strain SRCM103517]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFDELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=336212 EQW70_RS09070 WP_128740319.1 1709048..1709941(+) (dprA) [Bacillus subtilis strain SRCM103517]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGACGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374

Multiple sequence alignment