Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EQW70_RS05690 Genome accession   NZ_CP035226
Coordinates   1092722..1093300 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM103517     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087722..1098300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS05670 (EQW70_05670) hemAT 1088233..1089531 (-) 1299 WP_049140766.1 heme-based aerotactic transducer HemAT -
  EQW70_RS05675 (EQW70_05675) comW 1089670..1091199 (-) 1530 WP_128740181.1 FAD-dependent oxidoreductase -
  EQW70_RS05680 (EQW70_05680) yhxC 1091311..1092168 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  EQW70_RS05685 (EQW70_05685) yhzC 1092196..1092429 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  EQW70_RS05690 (EQW70_05690) comK 1092722..1093300 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  EQW70_RS05695 (EQW70_05695) yhxD 1093345..1094244 (-) 900 WP_128740182.1 SDR family oxidoreductase -
  EQW70_RS05700 (EQW70_05700) yhjA 1094461..1094730 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  EQW70_RS05705 (EQW70_05705) yhjB 1094774..1096243 (-) 1470 WP_072175677.1 sodium:solute symporter -
  EQW70_RS05710 (EQW70_05710) yhjC 1096240..1096440 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  EQW70_RS05715 (EQW70_05715) - 1096639..1097010 (-) 372 WP_064671203.1 hypothetical protein -
  EQW70_RS05720 (EQW70_05720) yhjE 1097162..1097785 (+) 624 WP_010886465.1 VTT domain-containing protein -
  EQW70_RS05725 (EQW70_05725) lepB 1097787..1098293 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=336197 EQW70_RS05690 WP_003245329.1 1092722..1093300(+) (comK) [Bacillus subtilis strain SRCM103517]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=336197 EQW70_RS05690 WP_003245329.1 1092722..1093300(+) (comK) [Bacillus subtilis strain SRCM103517]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment