Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FYK54_RS06350 Genome accession   NZ_CP043295
Coordinates   1299811..1300416 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WCHEC040047     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294811..1305416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK54_RS06330 (FYK54_06365) aes 1294952..1295911 (+) 960 WP_000801805.1 acetyl esterase -
  FYK54_RS06335 (FYK54_06370) hemH 1295908..1296870 (-) 963 WP_001250114.1 ferrochelatase -
  FYK54_RS06340 (FYK54_06375) adk 1297002..1297646 (-) 645 WP_001220233.1 adenylate kinase -
  FYK54_RS06345 (FYK54_06380) htpG 1297827..1299701 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FYK54_RS06350 (FYK54_06385) recR 1299811..1300416 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FYK54_RS06355 (FYK54_06390) ybaB 1300416..1300745 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FYK54_RS06360 (FYK54_06395) dnaX 1300798..1302729 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  FYK54_RS06365 (FYK54_06400) apt 1302858..1303409 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FYK54_RS06370 (FYK54_06405) ybaN 1303562..1303939 (-) 378 WP_001188905.1 DUF454 family protein -
  FYK54_RS06375 (FYK54_06410) priC 1304009..1304536 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  FYK54_RS06380 (FYK54_06415) rsmS 1304550..1304714 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=336181 FYK54_RS06350 WP_001195025.1 1299811..1300416(-) (recR) [Escherichia coli strain WCHEC040047]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=336181 FYK54_RS06350 WP_001195025.1 1299811..1300416(-) (recR) [Escherichia coli strain WCHEC040047]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443