Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FYK42_RS19050 | Genome accession | NZ_CP043284 |
| Coordinates | 3895024..3895464 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360895.1 | Uniprot ID | B7LFX5 |
| Organism | Escherichia coli strain WCHEC025985 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3890024..3900464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK42_RS19030 (FYK42_19185) | aroP | 3891022..3892395 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| FYK42_RS19035 (FYK42_19190) | ampE | 3892438..3893292 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| FYK42_RS19040 (FYK42_19195) | ampD | 3893289..3893840 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FYK42_RS19045 (FYK42_19200) | nadC | 3893928..3894821 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FYK42_RS19050 (FYK42_19205) | pilA | 3895024..3895464 (+) | 441 | WP_000360895.1 | prepilin peptidase-dependent pilin | Machinery gene |
| FYK42_RS19055 (FYK42_19210) | pilB | 3895474..3896859 (+) | 1386 | WP_001025173.1 | type II secretion system protein GspE | Machinery gene |
| FYK42_RS19060 (FYK42_19215) | hofC | 3896849..3898051 (+) | 1203 | WP_000157227.1 | protein transport protein HofC | - |
| FYK42_RS19065 (FYK42_19220) | guaC | 3898086..3899129 (-) | 1044 | WP_001217342.1 | GMP reductase | - |
| FYK42_RS19070 | - | 3899285..3899329 (-) | 45 | WP_120795372.1 | protein YacM | - |
| FYK42_RS19075 (FYK42_19225) | coaE | 3899354..3899974 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15602.71 Da Isoelectric Point: 4.3927
>NTDB_id=336147 FYK42_RS19050 WP_000360895.1 3895024..3895464(+) (pilA) [Escherichia coli strain WCHEC025985]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=336147 FYK42_RS19050 WP_000360895.1 3895024..3895464(+) (pilA) [Escherichia coli strain WCHEC025985]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |