Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FYK42_RS09075 Genome accession   NZ_CP043284
Coordinates   1883380..1884807 (-) Length   475 a.a.
NCBI ID   WP_000980583.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC025985     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1878380..1889807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK42_RS09050 (FYK42_09150) yoeI 1879249..1879311 (+) 63 WP_010723108.1 membrane protein YoeI -
  FYK42_RS09055 (FYK42_09155) plaP 1879301..1880659 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FYK42_RS09060 (FYK42_09160) - 1880899..1881879 (+) 981 WP_128759242.1 IS5-like element ISKpn26 family transposase -
  FYK42_RS09065 (FYK42_09165) tsuA 1882038..1883096 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  FYK42_RS09070 (FYK42_09170) tsuB 1883110..1883337 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FYK42_RS09075 (FYK42_09175) sbcB 1883380..1884807 (-) 1428 WP_000980583.1 exodeoxyribonuclease I Machinery gene
  FYK42_RS09080 (FYK42_09180) dacD 1885016..1886182 (+) 1167 WP_001351771.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FYK42_RS09085 (FYK42_09185) sbmC 1886301..1886774 (+) 474 WP_001105408.1 DNA gyrase inhibitor SbmC -
  FYK42_RS09090 (FYK42_09190) yeeA 1886972..1888030 (+) 1059 WP_001200891.1 FUSC family protein -
  FYK42_RS09095 (FYK42_09195) tmaR 1888202..1888531 (+) 330 WP_000450409.1 DUF496 family protein -
  FYK42_RS09100 (FYK42_09200) - 1888632..1888814 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  FYK42_RS09105 (FYK42_09205) - 1888868..1889014 (+) 147 Protein_1787 transposase domain-containing protein -
  FYK42_RS09110 (FYK42_09210) - 1889303..1889383 (-) 81 Protein_1788 hypothetical protein -
  FYK42_RS09115 (FYK42_09215) yeeW 1889429..1889623 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4700

>NTDB_id=336121 FYK42_RS09075 WP_000980583.1 1883380..1884807(-) (sbcB) [Escherichia coli strain WCHEC025985]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=336121 FYK42_RS09075 WP_000980583.1 1883380..1884807(-) (sbcB) [Escherichia coli strain WCHEC025985]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTGCCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCTTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment