Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SGGBAA2069_RS04245 Genome accession   NC_015215
Coordinates   832734..834941 (+) Length   735 a.a.
NCBI ID   WP_013642943.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 827734..839941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS04220 (SGGBAA2069_c07810) miaA 828073..828960 (+) 888 WP_013642940.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  SGGBAA2069_RS04225 (SGGBAA2069_c07820) hflX 829099..830337 (+) 1239 WP_013642941.1 GTPase HflX -
  SGGBAA2069_RS04230 (SGGBAA2069_c07830) - 830330..830968 (+) 639 WP_013642942.1 cystathionine beta-lyase -
  SGGBAA2069_RS04235 (SGGBAA2069_c07840) rnz 831008..831937 (+) 930 WP_009853926.1 ribonuclease Z -
  SGGBAA2069_RS04240 (SGGBAA2069_c07850) - 831934..832692 (+) 759 WP_012961775.1 SDR family NAD(P)-dependent oxidoreductase -
  SGGBAA2069_RS04245 (SGGBAA2069_c07860) recJ 832734..834941 (+) 2208 WP_013642943.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SGGBAA2069_RS12295 - 835108..835467 (+) 360 WP_231844607.1 DUF4352 domain-containing protein -
  SGGBAA2069_RS04250 (SGGBAA2069_c07880) - 835451..836377 (+) 927 WP_231844608.1 DUF5105 domain-containing protein -
  SGGBAA2069_RS04255 (SGGBAA2069_c07890) - 836576..836839 (+) 264 WP_012961777.1 hypothetical protein -
  SGGBAA2069_RS04260 (SGGBAA2069_c07900) - 836930..838279 (-) 1350 WP_009853931.1 hypothetical protein -
  SGGBAA2069_RS04265 (SGGBAA2069_c07910) - 838374..839156 (-) 783 WP_013642946.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82368.95 Da        Isoelectric Point: 4.3811

>NTDB_id=33612 SGGBAA2069_RS04245 WP_013642943.1 832734..834941(+) (recJ) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTVEKLTQFLSTDLSQLHDPYLLHDMDKAVERIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFEEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGLAKGSARSIEAINIFHALDE
HRGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLAEDSTANEVVVLDIPDKAEELKSLFVGRHFEAVYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKDLSQYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=33612 SGGBAA2069_RS04245 WP_013642943.1 832734..834941(+) (recJ) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGCCGAGGTGTTGATACGGTAGAAAAATTGACTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTGAGCGTATTCGCCAAGCCATTGAGAAC
TACGAGCAAATTTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGTATTATGAAAGAAGCCCTTGAAAT
GTTAGGCGCTGAAGCTCAAGTTTATCTGCCAAATCGTTTCACAGACGGCTATGGTCCCAATGAATCGGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATCACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGCTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTCGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGT
ATTATGGTTAAAGTCGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATGAAAGTCTCAGACGT
GGATATGGGAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGACGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAACGCAAGGAAATTGTTCAAAAAATCTTCGAAGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGTTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGCTTGCTAAAGGTTCAGCCAGAAGTATTGAGGCCATTAATATTTTCCATGCCCTTGATGAG
CACCGTGGCTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACTTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACCTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTATCAGAGATTGACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACCATGGGACAAAATGGTGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTAGCGCAGGAATTTCAACAAGCGCAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACAGCTAGCCTTCCAGAACGTGTTCCAGTATTGGCTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATTCCTGATAAGGCTGAAGAATTGAAATCACTCTTTGTCGGTCGTCATTTTGAAGCCG
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACTATCTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGATTTGAGTCAATACCTTAATATCCCTGATATTTT
ACTCGTTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CCCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAGTTAATGGCACTC
GGAACCCCACAAGAAATTTACGATTGGCTGACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

DHHA1 domain (DHHA1)

(317-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.838

100

0.683
  recJ Bacillus subtilis subsp. subtilis str. 168

38.273

100

0.404

Multiple sequence alignment