Detailed information NTG0336108

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FYK42_RS05560
• Genome accession: NZ_CP043284
• Coordinates: 1133790..1134782 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WCHEC025985
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1128790..1139782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYK42_RS05530 (FYK42_05630)	ispD	1128851..1129561 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FYK42_RS05535 (FYK42_05635)	ispF	1129561..1130040 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FYK42_RS05540 (FYK42_05640)	truD	1130037..1131086 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FYK42_RS05545 (FYK42_05645)	surE	1131067..1131828 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
FYK42_RS05550 (FYK42_05650)	pcm	1131822..1132448 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FYK42_RS05555 (FYK42_05655)	nlpD	1132633..1133727 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FYK42_RS05560 (FYK42_05660)	rpoS	1133790..1134782 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FYK42_RS05565 (FYK42_05665)	ygbN	1134876..1136240 (-)	1365	WP_000104456.1	GntP family transporter	-
FYK42_RS05570 (FYK42_05670)	ygbM	1136329..1137105 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FYK42_RS05575 (FYK42_05675)	ygbL	1137110..1137748 (-)	639	WP_001278994.1	aldolase	-
FYK42_RS05580 (FYK42_05680)	otnK	1137745..1139007 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=336108 FYK42_RS05560 WP_000081550.1 1133790..1134782(+) (rpoS) [Escherichia coli strain WCHEC025985]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=336108 FYK42_RS05560 WP_000081550.1 1133790..1134782(+) (rpoS) [Escherichia coli strain WCHEC025985]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715