Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FYK41_RS16620 Genome accession   NZ_CP043279
Coordinates   3475601..3476206 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WCHEC025157     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3470601..3481206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK41_RS16600 (FYK41_16710) aes 3470638..3471597 (+) 960 WP_000801813.1 acetyl esterase -
  FYK41_RS16605 (FYK41_16715) hemH 3471594..3472556 (-) 963 WP_001250103.1 ferrochelatase -
  FYK41_RS16610 (FYK41_16725) adk 3472792..3473436 (-) 645 WP_001220233.1 adenylate kinase -
  FYK41_RS16615 (FYK41_16730) htpG 3473617..3475491 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FYK41_RS16620 (FYK41_16735) recR 3475601..3476206 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FYK41_RS16625 (FYK41_16740) ybaB 3476206..3476535 (-) 330 WP_072647957.1 YbaB/EbfC family nucleoid-associated protein -
  FYK41_RS16630 (FYK41_16745) dnaX 3476588..3478519 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  FYK41_RS16635 (FYK41_16750) apt 3478648..3479199 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FYK41_RS16640 (FYK41_16755) ybaN 3479352..3479729 (-) 378 WP_001188905.1 DUF454 family protein -
  FYK41_RS16645 (FYK41_16760) priC 3479799..3480326 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  FYK41_RS16650 (FYK41_16765) rsmS 3480340..3480501 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=336059 FYK41_RS16620 WP_001195025.1 3475601..3476206(-) (recR) [Escherichia coli strain WCHEC025157]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=336059 FYK41_RS16620 WP_001195025.1 3475601..3476206(-) (recR) [Escherichia coli strain WCHEC025157]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443