Detailed information NTG0336026

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FYK41_RS05420
• Genome accession: NZ_CP043279
• Coordinates: 1119947..1120939 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WCHEC025157
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1114947..1125939

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYK41_RS05390 (FYK41_05430)	ispD	1115008..1115718 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FYK41_RS05395 (FYK41_05435)	ispF	1115718..1116197 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FYK41_RS05400 (FYK41_05440)	truD	1116194..1117243 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FYK41_RS05405 (FYK41_05445)	surE	1117224..1117985 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FYK41_RS05410 (FYK41_05450)	pcm	1117979..1118605 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FYK41_RS05415 (FYK41_05455)	nlpD	1118790..1119884 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FYK41_RS05420 (FYK41_05460)	rpoS	1119947..1120939 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FYK41_RS05425 (FYK41_05465)	ygbN	1121033..1122397 (-)	1365	WP_000104441.1	GntP family transporter	-
FYK41_RS05430 (FYK41_05470)	ygbM	1122486..1123262 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FYK41_RS05435 (FYK41_05475)	ygbL	1123267..1123905 (-)	639	WP_001278994.1	aldolase	-
FYK41_RS05440 (FYK41_05480)	otnK	1123902..1125164 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=336026 FYK41_RS05420 WP_000081550.1 1119947..1120939(+) (rpoS) [Escherichia coli strain WCHEC025157]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=336026 FYK41_RS05420 WP_000081550.1 1119947..1120939(+) (rpoS) [Escherichia coli strain WCHEC025157]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715