Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FYK53_RS08710 Genome accession   NZ_CP043274
Coordinates   1830195..1831622 (-) Length   475 a.a.
NCBI ID   WP_112031983.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC035148     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825195..1836622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK53_RS08680 (FYK53_08710) yeeY 1825579..1826508 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  FYK53_RS08685 (FYK53_08715) yoeI 1826723..1826785 (+) 63 WP_010723108.1 membrane protein YoeI -
  FYK53_RS08690 (FYK53_08720) plaP 1826775..1828133 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FYK53_RS08700 (FYK53_08730) tsuA 1828952..1829911 (+) 960 Protein_1707 YeeE/YedE family protein -
  FYK53_RS08705 (FYK53_08735) tsuB 1829925..1830152 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FYK53_RS08710 (FYK53_08740) sbcB 1830195..1831622 (-) 1428 WP_112031983.1 exodeoxyribonuclease I Machinery gene
  FYK53_RS08715 (FYK53_08745) dacD 1831831..1832997 (+) 1167 WP_046660321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FYK53_RS08720 (FYK53_08750) sbmC 1833116..1833589 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  FYK53_RS08725 (FYK53_08755) yeeA 1833788..1834846 (+) 1059 WP_001200892.1 FUSC family protein -
  FYK53_RS08730 (FYK53_08760) tmaR 1835018..1835347 (+) 330 WP_000450409.1 DUF496 family protein -
  FYK53_RS08735 - 1835448..1835813 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  FYK53_RS08740 - 1836084..1836473 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54502.74 Da        Isoelectric Point: 5.3498

>NTDB_id=335957 FYK53_RS08710 WP_112031983.1 1830195..1831622(-) (sbcB) [Escherichia coli strain WCHEC035148]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYEDELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=335957 FYK53_RS08710 WP_112031983.1 1830195..1831622(-) (sbcB) [Escherichia coli strain WCHEC035148]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGAAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment