Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | EQJ84_RS12790 | Genome accession | NZ_CP035191 |
| Coordinates | 2490234..2490644 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain SRCM104011 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2485599..2537092 | 2490234..2490644 | within | 0 |
Gene organization within MGE regions
Location: 2485599..2537092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQJ84_RS12765 (EQJ84_12765) | yqeF | 2485766..2486497 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| EQJ84_RS12770 (EQJ84_12770) | cwlH | 2486749..2487501 (-) | 753 | WP_021480067.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| EQJ84_RS12775 (EQJ84_12775) | yqeD | 2487688..2488314 (+) | 627 | WP_041850032.1 | TVP38/TMEM64 family protein | - |
| EQJ84_RS12780 (EQJ84_12780) | gnd | 2488334..2489227 (-) | 894 | WP_041850033.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| EQJ84_RS12785 (EQJ84_12785) | yqeB | 2489479..2490201 (+) | 723 | WP_032726205.1 | hypothetical protein | - |
| EQJ84_RS12790 (EQJ84_12790) | nucA/comI | 2490234..2490644 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| EQJ84_RS12795 (EQJ84_12795) | - | 2490840..2491187 (+) | 348 | Protein_2466 | sigma-70 family RNA polymerase sigma factor | - |
| EQJ84_RS12800 (EQJ84_12800) | spoIVCA | 2491218..2492678 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| EQJ84_RS21485 (EQJ84_12805) | - | 2492636..2492814 (-) | 179 | Protein_2468 | hypothetical protein | - |
| EQJ84_RS12810 (EQJ84_12810) | arsC | 2493169..2493588 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| EQJ84_RS12815 (EQJ84_12815) | acr3 | 2493600..2494640 (-) | 1041 | WP_032722149.1 | arsenite efflux transporter Acr3 | - |
| EQJ84_RS12820 (EQJ84_12820) | arsK | 2494663..2495103 (-) | 441 | WP_128441741.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| EQJ84_RS12825 (EQJ84_12825) | arsR | 2495162..2495479 (-) | 318 | WP_029318103.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| EQJ84_RS12830 (EQJ84_12830) | yqcI | 2495851..2496615 (-) | 765 | WP_017696291.1 | YqcI/YcgG family protein | - |
| EQJ84_RS12835 (EQJ84_12835) | rapE | 2497058..2498185 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| EQJ84_RS12840 (EQJ84_12840) | phrE | 2498175..2498309 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| EQJ84_RS12845 (EQJ84_12845) | - | 2498419..2498577 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| EQJ84_RS12850 (EQJ84_12850) | yqcG | 2498947..2500542 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| EQJ84_RS12855 (EQJ84_12855) | yqcF | 2500557..2501135 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| EQJ84_RS12860 (EQJ84_12860) | - | 2501253..2501399 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| EQJ84_RS12865 (EQJ84_12865) | - | 2501396..2501758 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| EQJ84_RS12870 (EQJ84_12870) | - | 2501774..2502253 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| EQJ84_RS12875 (EQJ84_12875) | cwlA | 2502418..2503236 (-) | 819 | WP_017697459.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| EQJ84_RS12880 (EQJ84_12880) | skhD | 2503281..2503703 (-) | 423 | WP_017697460.1 | holin family protein | - |
| EQJ84_RS12885 (EQJ84_12885) | xepAK | 2503749..2504642 (-) | 894 | WP_032722160.1 | hypothetical protein | - |
| EQJ84_RS12890 (EQJ84_12890) | yqcE | 2504730..2504894 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| EQJ84_RS12895 (EQJ84_12895) | yqcD | 2504891..2505226 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| EQJ84_RS12900 (EQJ84_12900) | yqcC | 2505236..2506336 (-) | 1101 | WP_032722161.1 | pyocin knob domain-containing protein | - |
| EQJ84_RS12905 (EQJ84_12905) | - | 2506340..2506612 (-) | 273 | WP_032722163.1 | hypothetical protein | - |
| EQJ84_RS12910 (EQJ84_12910) | yqcA | 2506609..2507187 (-) | 579 | WP_032722164.1 | YmfQ family protein | - |
| EQJ84_RS12915 (EQJ84_12915) | yqbT | 2507171..2508217 (-) | 1047 | WP_032722165.1 | baseplate J/gp47 family protein | - |
| EQJ84_RS12920 (EQJ84_12920) | yqbS | 2508210..2508635 (-) | 426 | WP_032722166.1 | DUF2634 domain-containing protein | - |
| EQJ84_RS12925 (EQJ84_12925) | yqbR | 2508648..2508914 (-) | 267 | WP_032722167.1 | DUF2577 family protein | - |
| EQJ84_RS12930 (EQJ84_12930) | yqbQ | 2508911..2509891 (-) | 981 | WP_032722168.1 | hypothetical protein | - |
| EQJ84_RS12935 (EQJ84_12935) | yqbP | 2509904..2510563 (-) | 660 | WP_032722169.1 | LysM peptidoglycan-binding domain-containing protein | - |
| EQJ84_RS12940 (EQJ84_12940) | yqbO | 2510556..2515313 (-) | 4758 | WP_043940167.1 | phage tail tape measure protein | - |
| EQJ84_RS12945 (EQJ84_12945) | - | 2515316..2515453 (-) | 138 | WP_021480099.1 | hypothetical protein | - |
| EQJ84_RS12950 (EQJ84_12950) | - | 2515495..2515944 (-) | 450 | WP_032722171.1 | phage portal protein | - |
| EQJ84_RS12955 (EQJ84_12955) | txpA | 2516090..2516269 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| EQJ84_RS12960 (EQJ84_12960) | bsrH | 2516649..2516738 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| EQJ84_RS12965 (EQJ84_12965) | yqbM | 2516992..2517435 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| EQJ84_RS12970 (EQJ84_12970) | yqbK | 2517438..2518838 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| EQJ84_RS12975 (EQJ84_12975) | - | 2518839..2518988 (-) | 150 | WP_128484481.1 | hypothetical protein | - |
| EQJ84_RS12980 (EQJ84_12980) | yqbJ | 2519026..2519463 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| EQJ84_RS12985 (EQJ84_12985) | yqbI | 2519476..2519979 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| EQJ84_RS12990 (EQJ84_12990) | yqbH | 2519976..2520338 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| EQJ84_RS12995 (EQJ84_12995) | gkpG | 2520335..2520730 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| EQJ84_RS13000 (EQJ84_13000) | yqbF | 2520734..2521045 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| EQJ84_RS13005 (EQJ84_13005) | skdG | 2521056..2521991 (-) | 936 | WP_128441743.1 | phage major capsid protein | - |
| EQJ84_RS13010 (EQJ84_13010) | yqbD | 2522010..2522978 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| EQJ84_RS13015 (EQJ84_13015) | - | 2523011..2523664 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| EQJ84_RS13020 (EQJ84_13020) | yqbB | 2523705..2524622 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| EQJ84_RS13025 (EQJ84_13025) | yqbA | 2524619..2526151 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| EQJ84_RS13030 (EQJ84_13030) | stmB | 2526155..2527450 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| EQJ84_RS13035 (EQJ84_13035) | terS | 2527443..2528162 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| EQJ84_RS13040 (EQJ84_13040) | - | 2528230..2528694 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| EQJ84_RS13045 (EQJ84_13045) | yqaQ | 2528838..2529293 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| EQJ84_RS13050 (EQJ84_13050) | - | 2529491..2530420 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| EQJ84_RS13055 (EQJ84_13055) | yqaO | 2530494..2530700 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| EQJ84_RS13060 (EQJ84_13060) | yqaN | 2530782..2531210 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EQJ84_RS13065 (EQJ84_13065) | - | 2531306..2531455 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| EQJ84_RS13070 (EQJ84_13070) | sknM | 2531446..2532387 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| EQJ84_RS13075 (EQJ84_13075) | yqaL | 2532269..2532946 (-) | 678 | WP_116362964.1 | DnaD domain protein | - |
| EQJ84_RS13080 (EQJ84_13080) | recT | 2533022..2533876 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| EQJ84_RS13085 (EQJ84_13085) | yqaJ | 2533879..2534838 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| EQJ84_RS13090 (EQJ84_13090) | - | 2534944..2535138 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| EQJ84_RS13095 (EQJ84_13095) | - | 2535098..2535271 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| EQJ84_RS13100 (EQJ84_13100) | sknH | 2535268..2535525 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| EQJ84_RS13105 (EQJ84_13105) | yqaG | 2535522..2536091 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| EQJ84_RS13110 (EQJ84_13110) | - | 2536165..2536305 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| EQJ84_RS13115 (EQJ84_13115) | yqaF | 2536335..2536565 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| EQJ84_RS13120 (EQJ84_13120) | sknR | 2536742..2537092 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=335911 EQJ84_RS12790 WP_009967785.1 2490234..2490644(-) (nucA/comI) [Bacillus subtilis strain SRCM104011]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=335911 EQJ84_RS12790 WP_009967785.1 2490234..2490644(-) (nucA/comI) [Bacillus subtilis strain SRCM104011]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCAATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCAATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |