Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQJ84_RS12200 Genome accession   NZ_CP035191
Coordinates   2391529..2391864 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM104011     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2386529..2396864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ84_RS12175 (EQJ84_12175) gcvT 2387120..2388208 (-) 1089 WP_038829737.1 glycine cleavage system aminomethyltransferase GcvT -
  EQJ84_RS12180 (EQJ84_12180) hepAA 2388650..2390323 (+) 1674 WP_038829735.1 SNF2-related protein -
  EQJ84_RS12185 (EQJ84_12185) yqhG 2390344..2391138 (+) 795 WP_032726154.1 YqhG family protein -
  EQJ84_RS12195 (EQJ84_12195) sinI 2391322..2391495 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  EQJ84_RS12200 (EQJ84_12200) sinR 2391529..2391864 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EQJ84_RS12205 (EQJ84_12205) tasA 2391956..2392741 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  EQJ84_RS12210 (EQJ84_12210) sipW 2392806..2393378 (-) 573 WP_077671469.1 signal peptidase I SipW -
  EQJ84_RS12215 (EQJ84_12215) tapA 2393362..2394123 (-) 762 WP_032726156.1 amyloid fiber anchoring/assembly protein TapA -
  EQJ84_RS12220 (EQJ84_12220) yqzG 2394395..2394721 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQJ84_RS12225 (EQJ84_12225) spoIITA 2394763..2394942 (-) 180 WP_014480252.1 YqzE family protein -
  EQJ84_RS12230 (EQJ84_12230) comGG 2395014..2395388 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  EQJ84_RS12235 (EQJ84_12235) comGF 2395389..2395772 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  EQJ84_RS12240 (EQJ84_12240) comGE 2395798..2396145 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  EQJ84_RS12245 (EQJ84_12245) comGD 2396129..2396560 (-) 432 WP_038829732.1 comG operon protein ComGD Machinery gene
  EQJ84_RS12250 (EQJ84_12250) comGC 2396550..2396846 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=335899 EQJ84_RS12200 WP_003226345.1 2391529..2391864(+) (sinR) [Bacillus subtilis strain SRCM104011]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=335899 EQJ84_RS12200 WP_003226345.1 2391529..2391864(+) (sinR) [Bacillus subtilis strain SRCM104011]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment