Detailed information NTG0335866

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FX998_RS08950
• Genome accession: NZ_CP043227
• Coordinates: 1832740..1833732 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ec-050
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1827740..1838732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FX998_RS08930 (FX998_08930)	otnK	1828515..1829777 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
FX998_RS08935 (FX998_08935)	ygbL	1829774..1830412 (+)	639	WP_001278994.1	aldolase	-
FX998_RS08940 (FX998_08940)	ygbM	1830417..1831193 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FX998_RS08945 (FX998_08945)	ygbN	1831282..1832646 (+)	1365	WP_000104441.1	GntP family transporter	-
FX998_RS08950 (FX998_08950)	rpoS	1832740..1833732 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FX998_RS08955 (FX998_08955)	nlpD	1833795..1834889 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FX998_RS08960 (FX998_08960)	pcm	1835074..1835700 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FX998_RS08965 (FX998_08965)	surE	1835694..1836455 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FX998_RS08970 (FX998_08970)	truD	1836436..1837485 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FX998_RS08975 (FX998_08975)	ispF	1837482..1837961 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FX998_RS08980 (FX998_08980)	ispD	1837961..1838671 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=335866 FX998_RS08950 WP_000081550.1 1832740..1833732(-) (rpoS) [Escherichia coli strain Ec-050]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=335866 FX998_RS08950 WP_000081550.1 1832740..1833732(-) (rpoS) [Escherichia coli strain Ec-050]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715