Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FX998_RS08675 Genome accession   NZ_CP043227
Coordinates   1780398..1780913 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain Ec-050     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775398..1785913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX998_RS08650 (FX998_08650) ygaZ 1775797..1776534 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FX998_RS08655 (FX998_08655) ygaH 1776524..1776859 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FX998_RS08660 (FX998_08660) emrR 1776950..1777480 (+) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FX998_RS08665 (FX998_08665) emrA 1777607..1778779 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FX998_RS08670 (FX998_08670) emrB 1778796..1780334 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FX998_RS08675 (FX998_08675) luxS 1780398..1780913 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FX998_RS08680 (FX998_08680) gshA 1781063..1782619 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FX998_RS08685 (FX998_08685) yqaA 1782692..1783120 (-) 429 WP_039023139.1 YqaA family protein -
  FX998_RS08690 (FX998_08690) yqaB 1783117..1783683 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FX998_RS08720 (FX998_08720) csrA 1785141..1785326 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=335863 FX998_RS08675 WP_001130211.1 1780398..1780913(-) (luxS) [Escherichia coli strain Ec-050]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=335863 FX998_RS08675 WP_001130211.1 1780398..1780913(-) (luxS) [Escherichia coli strain Ec-050]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment