Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FYA02_RS21290 Genome accession   NZ_CP043217
Coordinates   4295199..4295804 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O80:H26 strain EC-107     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4290199..4300804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA02_RS21260 (FYA02_21260) rsmS 4290904..4291065 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  FYA02_RS21265 (FYA02_21265) priC 4291079..4291606 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  FYA02_RS21270 (FYA02_21270) ybaN 4291676..4292053 (+) 378 WP_001188905.1 DUF454 family protein -
  FYA02_RS21275 (FYA02_21275) apt 4292206..4292757 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FYA02_RS21280 (FYA02_21280) dnaX 4292886..4294817 (+) 1932 WP_000122020.1 DNA polymerase III subunit gamma/tau -
  FYA02_RS21285 (FYA02_21285) ybaB 4294870..4295199 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FYA02_RS21290 (FYA02_21290) recR 4295199..4295804 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FYA02_RS21295 (FYA02_21295) htpG 4295914..4297788 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  FYA02_RS21300 (FYA02_21300) adk 4297969..4298613 (+) 645 WP_001220233.1 adenylate kinase -
  FYA02_RS21310 (FYA02_21310) hemH 4298849..4299811 (+) 963 WP_001250103.1 ferrochelatase -
  FYA02_RS21315 (FYA02_21315) aes 4299808..4300767 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=335833 FYA02_RS21290 WP_001195025.1 4295199..4295804(+) (recR) [Escherichia coli O80:H26 strain EC-107]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=335833 FYA02_RS21290 WP_001195025.1 4295199..4295804(+) (recR) [Escherichia coli O80:H26 strain EC-107]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment