Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FYA02_RS19610 | Genome accession | NZ_CP043217 |
| Coordinates | 3939876..3940316 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli O80:H26 strain EC-107 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3934876..3945316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA02_RS19590 (FYA02_19590) | coaE | 3935366..3935986 (-) | 621 | WP_001269527.1 | dephospho-CoA kinase | - |
| FYA02_RS27110 | - | 3936011..3936055 (+) | 45 | WP_120795372.1 | protein YacM | - |
| FYA02_RS19595 (FYA02_19595) | guaC | 3936211..3937254 (+) | 1044 | WP_001217337.1 | GMP reductase | - |
| FYA02_RS19600 (FYA02_19600) | hofC | 3937289..3938491 (-) | 1203 | WP_000157266.1 | protein transport protein HofC | - |
| FYA02_RS19605 (FYA02_19605) | pilB | 3938481..3939866 (-) | 1386 | WP_063856362.1 | type II secretion system protein GspE | Machinery gene |
| FYA02_RS19610 (FYA02_19610) | pilA | 3939876..3940316 (-) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| FYA02_RS19615 (FYA02_19615) | nadC | 3940519..3941412 (-) | 894 | WP_001135176.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FYA02_RS19620 (FYA02_19620) | ampD | 3941500..3942051 (+) | 552 | WP_000923722.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FYA02_RS19625 (FYA02_19625) | ampE | 3942048..3942902 (+) | 855 | WP_000172014.1 | beta-lactamase regulator AmpE | - |
| FYA02_RS19630 (FYA02_19630) | aroP | 3942945..3944318 (-) | 1374 | WP_000969912.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=335828 FYA02_RS19610 WP_000360904.1 3939876..3940316(-) (pilA) [Escherichia coli O80:H26 strain EC-107]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=335828 FYA02_RS19610 WP_000360904.1 3939876..3940316(-) (pilA) [Escherichia coli O80:H26 strain EC-107]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |