Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQJ69_RS12100 Genome accession   NZ_CP035188
Coordinates   2337197..2337793 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus licheniformis strain SRCM103914     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2332197..2342793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ69_RS12060 (EQJ69_12060) - 2333215..2333721 (-) 507 WP_003182879.1 PTS glucose transporter subunit IIA -
  EQJ69_RS12065 (EQJ69_12065) - 2333897..2334316 (+) 420 WP_003182880.1 hypothetical protein -
  EQJ69_RS12070 (EQJ69_12070) - 2334335..2334778 (-) 444 WP_003182882.1 YppG family protein -
  EQJ69_RS12075 (EQJ69_12075) - 2334958..2335158 (+) 201 WP_011198064.1 YppF family protein -
  EQJ69_RS12080 (EQJ69_12080) - 2335191..2335562 (-) 372 WP_003182887.1 YppE family protein -
  EQJ69_RS12085 (EQJ69_12085) - 2335620..2335847 (-) 228 WP_003182890.1 YppD family protein -
  EQJ69_RS12090 (EQJ69_12090) sspM 2336047..2336151 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  EQJ69_RS12095 (EQJ69_12095) - 2336184..2337116 (-) 933 WP_026080760.1 DUF2515 domain-containing protein -
  EQJ69_RS12100 (EQJ69_12100) recU 2337197..2337793 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  EQJ69_RS12105 (EQJ69_12105) - 2337851..2340538 (+) 2688 WP_003182898.1 PBP1A family penicillin-binding protein -
  EQJ69_RS12110 (EQJ69_12110) - 2340559..2341023 (-) 465 WP_202604373.1 YpoC family protein -
  EQJ69_RS12115 (EQJ69_12115) nth 2341059..2341721 (-) 663 WP_003182903.1 endonuclease III -
  EQJ69_RS12120 (EQJ69_12120) - 2341738..2342436 (-) 699 WP_003182905.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=335823 EQJ69_RS12100 WP_003182896.1 2337197..2337793(+) (recU) [Bacillus licheniformis strain SRCM103914]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=335823 EQJ69_RS12100 WP_003182896.1 2337197..2337793(+) (recU) [Bacillus licheniformis strain SRCM103914]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment