Detailed information NTG0335784

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FYA02_RS10045
• Genome accession: NZ_CP043217
• Coordinates: 1966516..1967508 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O80:H26 strain EC-107
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1961516..1972508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYA02_RS10025 (FYA02_10025)	otnK	1962291..1963553 (+)	1263	WP_000590404.1	3-oxo-tetronate kinase	-
FYA02_RS10030 (FYA02_10030)	ygbL	1963550..1964188 (+)	639	WP_001278994.1	aldolase	-
FYA02_RS10035 (FYA02_10035)	ygbM	1964193..1964969 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FYA02_RS10040 (FYA02_10040)	ygbN	1965058..1966422 (+)	1365	WP_103743912.1	GntP family transporter	-
FYA02_RS10045 (FYA02_10045)	rpoS	1966516..1967508 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FYA02_RS10050 (FYA02_10050)	nlpD	1967571..1968665 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FYA02_RS10055 (FYA02_10055)	pcm	1968850..1969476 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FYA02_RS10060 (FYA02_10060)	surE	1969470..1970231 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FYA02_RS10065 (FYA02_10065)	truD	1970212..1971261 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FYA02_RS10070 (FYA02_10070)	ispF	1971258..1971737 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FYA02_RS10075 (FYA02_10075)	ispD	1971737..1972447 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=335784 FYA02_RS10045 WP_000081550.1 1966516..1967508(-) (rpoS) [Escherichia coli O80:H26 strain EC-107]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=335784 FYA02_RS10045 WP_000081550.1 1966516..1967508(-) (rpoS) [Escherichia coli O80:H26 strain EC-107]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715