Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FYA02_RS05750 Genome accession   NZ_CP043217
Coordinates   1083825..1085252 (+) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli O80:H26 strain EC-107     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078825..1090252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA02_RS05710 (FYA02_05710) yeeW 1079029..1079223 (+) 195 WP_000988599.1 DUF5983 family protein -
  FYA02_RS05715 (FYA02_05715) - 1079269..1079349 (+) 81 Protein_1102 hypothetical protein -
  FYA02_RS05720 (FYA02_05720) - 1079638..1079784 (-) 147 Protein_1103 transposase domain-containing protein -
  FYA02_RS05725 (FYA02_05725) - 1079838..1080020 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FYA02_RS05730 (FYA02_05730) tmaR 1080121..1080450 (-) 330 WP_000450409.1 DUF496 family protein -
  FYA02_RS05735 (FYA02_05735) yeeA 1080622..1081680 (-) 1059 WP_001200905.1 FUSC family protein -
  FYA02_RS05740 (FYA02_05740) sbmC 1081878..1082351 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FYA02_RS05745 (FYA02_05745) dacD 1082470..1083636 (-) 1167 WP_148880036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FYA02_RS05750 (FYA02_05750) sbcB 1083825..1085252 (+) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  FYA02_RS05755 (FYA02_05755) tsuB 1085295..1085522 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FYA02_RS05760 (FYA02_05760) tsuA 1085536..1086594 (-) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  FYA02_RS05765 (FYA02_05765) plaP 1086773..1088131 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FYA02_RS05770 (FYA02_05770) yoeI 1088121..1088183 (-) 63 WP_010723108.1 membrane protein YoeI -
  FYA02_RS05775 (FYA02_05775) yeeY 1088398..1089327 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FYA02_RS05780 (FYA02_05780) yeeZ 1089373..1090197 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=335770 FYA02_RS05750 WP_000980612.1 1083825..1085252(+) (sbcB) [Escherichia coli O80:H26 strain EC-107]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=335770 FYA02_RS05750 WP_000980612.1 1083825..1085252(+) (sbcB) [Escherichia coli O80:H26 strain EC-107]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583